<?xml version='1.0' encoding='UTF-8'?>
<macros>
    <xml name="motif_finding_params">
        <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
        <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
        <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
    </xml>
    <xml name="label_cond_params_start">
        <param name="input" type="data" format="bam,bed,scidx" label="Run multigps on" help="Supported formats are bam, bed and scidx">
            <validator type="unspecified_build" />
        </param>
        <param name="control" type="data" format="bam,bed,scidx" optional="True" label="Optional file containing reads from a control experiment" help="Must be same forat as the input above" />
        <param name="condition_name" type="text" label="Condition name" />
    </xml>
    <xml name="label_cond_params_end">
        <param name="experiment_type" type="select" label="Experiment type for this replicate">
            <option value="None" selected="True">Do not set</option>
            <option value="chipseq">ChIP-seq</option>
            <option value="chipexo">ChIP-exo</option>
        </param>
        <param  name="fixedreadcount" type="select" label="Use fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution.">
            <option value="None" selected="True">No</option>
            <option value="P">Yes</option>
        </param>
    </xml>
</macros>