Mercurial > repos > iuc > multigps
diff multigps.xml @ 23:eb9b1816f00e draft
Uploaded
| author | iuc |
|---|---|
| date | Tue, 04 Apr 2017 21:28:45 -0400 |
| parents | 9c13cdf2ed1e |
| children | d61d1aaf4b07 |
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--- a/multigps.xml Tue Apr 04 21:22:17 2017 -0400 +++ b/multigps.xml Tue Apr 04 21:28:45 2017 -0400 @@ -166,11 +166,13 @@ fh = open('design.tabular', 'w') for cond_i, condition_items in enumerate(condition_repeat): + fh.write('%s\n' % str(condition_items) + """ for signal_items in condition_items['signal_repeat']: signal = signal_items['signal'] replicate_name = signal_items['replicate_name'] experiment_type = signal['experiment_type'] - line_items = [signal, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type] + line_items = [signal.file_name, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type] fixedreadcount_cond = signal_items['fixedreadcount_cond'] fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select'] if fixedreadcount_select == 'yes': @@ -179,7 +181,7 @@ for control_items in condition_items['control_repeat']: control = control_items['control'] experiment_type = control_items['experiment_type'] - line_items = [control, 'Control', control.ext.upper(), cond_i] + line_items = [control.file_name, 'Control', control.ext.upper(), cond_i] specify_replicate_name_cond = control_items['specify_replicate_name_cond'] specify_replicate_name = specify_replicate_name_cond['specify_replicate_name'] if specify_replicate_name == 'yes': @@ -190,6 +192,7 @@ if fixedreadcount_select == 'yes': line_items.append(fixedreadcount_cond['fixedreadcount']) fh.write('%s\n' % '\t'.join(line_items)) + """ fh.close() ]]> </configfile>
