--- a/multigps.xml	Wed Apr 05 11:28:08 2017 -0400
+++ b/multigps.xml	Wed Apr 05 11:31:46 2017 -0400
@@ -158,22 +158,22 @@
 #for $condition_items in $condition_repeat:
     #for $signal_items in $condition_items.signal_repeat:
         #if str($signal_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
-            #set frc = $signal_items.fixedreadcount_cond.fixedreadcount
+            #set $frc = $signal_items.fixedreadcount_cond.fixedreadcount
         #else:
-            #set frc = ''
+            #set $frc = ''
         #end if
 ${signal_items.signal}	Signal	${signal_items.signal.ext.upper()}	${signal_items.condition_name}	${signal_items.replicate_name}	${signal_items.experiment_type}	${frc}
     #end for
     #for $control_items in $condition_items.control_repeat:
         #if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'yes':
-            #set rn = $control_items.specify_replicate_name_cond.replicate_name
+            #set $rn = $control_items.specify_replicate_name_cond.replicate_name
         #else:
-            #set rn = ''
+            #set $rn = ''
         #end if
         #if str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
-            #set frc = $control_items.fixedreadcount_cond.fixedreadcount
+            #set $frc = $control_items.fixedreadcount_cond.fixedreadcount
         #else:
-            #set frc = ''
+            #set $frc = ''
         #end if
 ${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}	${rn}	${control_items.experiment_type}	${frc}
     #end for