--- a/multigps.xml	Tue Apr 04 15:23:30 2017 -0400
+++ b/multigps.xml	Tue Apr 04 15:29:17 2017 -0400
@@ -156,8 +156,8 @@
         <inputs name="inputs"/>
         <configfile name="design_file">
 <![CDATA[
-#for cond_i, condition_items in enumerate($condition_repeat):
-    #for signal_items in $condition_items['signal_repeat']:
+#for $cond_i, $condition_items in enumerate($condition_repeat):
+    #for $signal_items in $condition_items['signal_repeat']:
         #set signal = $signal_items['signal']
         #set replicate_name = $signal_items['replicate_name']
         #set experiment_type = $signal['experiment_type']
@@ -169,7 +169,7 @@
         #end if
         '%s\n' % $line
     #end for
-    #for control_items in condition_items['control_repeat']:
+    #for $control_items in condition_items['control_repeat']:
         #set control = $control_items['control']
         #set experiment_type = $control_items['experiment_type']
         #set line = str($control_items) + '\t' + 'Control' + '\t' + str($control.ext.upper()) + '\t' + str($cond_i)