Mercurial > repos > iuc > multigps
comparison macros.xml @ 44:03cec12dafc3 draft default tip
"planemo upload commit 9e4d2776d6b3276e2849943439799b82d989bc3b"
| author | iuc |
|---|---|
| date | Sun, 22 Dec 2019 17:11:12 +0000 |
| parents | ca90b0b3bd64 |
| children |
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| 43:61f2dedb6b85 | 44:03cec12dafc3 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <macros> | 2 <macros> |
| 3 <xml name="motif_finding_params"> | |
| 4 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" /> | |
| 5 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" /> | |
| 6 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" /> | |
| 7 </xml> | |
| 8 <xml name="param_experiment_type"> | |
| 9 <param name="experiment_type" type="select" display="radio" label="Experiment type for this replicate"> | |
| 10 <option value="chipseq" selected="True">ChIP-seq</option> | |
| 11 <option value="chipexo">ChIP-exo</option> | |
| 12 </param> | |
| 13 </xml> | |
| 14 <xml name="cond_fixedreadcount"> | 3 <xml name="cond_fixedreadcount"> |
| 15 <conditional name="fixedreadcount_cond"> | 4 <conditional name="fixedreadcount_cond"> |
| 16 <param name="fixedreadcount_select" type="select" label="Set fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution."> | 5 <param name="fixedreadcount_select" type="select" label="Set fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution."> |
| 17 <option value="no" selected="True">No</option> | 6 <option value="no" selected="True">No</option> |
| 18 <option value="yes">Yes</option> | 7 <option value="yes">Yes</option> |
| 21 <when value="yes"> | 10 <when value="yes"> |
| 22 <param name="fixedreadcount" type="integer" value="0" min="0" label="Fixed per-base read count limit"/> | 11 <param name="fixedreadcount" type="integer" value="0" min="0" label="Fixed per-base read count limit"/> |
| 23 </when> | 12 </when> |
| 24 </conditional> | 13 </conditional> |
| 25 </xml> | 14 </xml> |
| 15 <xml name="param_experiment_type"> | |
| 16 <param name="experiment_type" type="select" display="radio" label="Experiment type for this replicate"> | |
| 17 <option value="chipseq" selected="True">ChIP-seq</option> | |
| 18 <option value="chipexo">ChIP-exo</option> | |
| 19 </param> | |
| 20 </xml> | |
| 21 <xml name="motif_finding_params"> | |
| 22 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" /> | |
| 23 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" /> | |
| 24 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" /> | |
| 25 </xml> | |
| 26 <xml name="requirements"> | |
| 27 <requirements> | |
| 28 <requirement type="package" version="1">fonts-conda-ecosystem</requirement> | |
| 29 <requirement type="package" version="0.74">multigps</requirement> | |
| 30 <yield/> | |
| 31 </requirements> | |
| 32 </xml> | |
| 26 </macros> | 33 </macros> |