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comparison macros.xml @ 7:6d6ceda98d94 draft

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author iuc
date Tue, 04 Apr 2017 14:40:36 -0400
parents d78ff3764fe5
children ca90b0b3bd64
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6:7dc47046b54c 7:6d6ceda98d94
3 <xml name="motif_finding_params"> 3 <xml name="motif_finding_params">
4 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" /> 4 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
5 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" /> 5 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
6 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" /> 6 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
7 </xml> 7 </xml>
8 <xml name="label_cond_params_start"> 8 <xml name="param_experiment_type">
9 <param name="input" type="data" format="bam,bed,scidx" label="Run multigps on" help="Supported formats are bam, bed and scidx">
10 <validator type="unspecified_build" />
11 </param>
12 <param name="control" type="data" format="bam,bed,scidx" optional="True" label="Optional file containing reads from a control experiment" help="Must be same forat as the input above" />
13 <param name="condition_name" type="text" label="Condition name" />
14 </xml>
15 <xml name="label_cond_params_end">
16 <param name="experiment_type" type="select" label="Experiment type for this replicate"> 9 <param name="experiment_type" type="select" label="Experiment type for this replicate">
17 <option value="None" selected="True">Do not set</option> 10 <option value="chipseq" selected="True">ChIP-seq</option>
18 <option value="chipseq">ChIP-seq</option>
19 <option value="chipexo">ChIP-exo</option> 11 <option value="chipexo">ChIP-exo</option>
20 </param> 12 </param>
21 <param name="fixedreadcount" type="select" label="Use fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution."> 13 </xml>
22 <option value="None" selected="True">No</option> 14 <xml name="cond_fixedreadcount">
23 <option value="P">Yes</option> 15 <conditional name="fixedreadcount_cond">
24 </param> 16 <param name="fixedreadcount_select" type="select" label="Set fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution.">
17 <option value="no" selected="True">No</option>
18 <option value="yes">Yes</option>
19 </param>
20 <when value="no"/>
21 <when value="yes">
22 <param name="fixedreadcount" type="integer" value="0" min="0" label="Fixed per-base read count limit"/>
23 </when>
24 </conditional>
25 </xml> 25 </xml>
26 </macros> 26 </macros>