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comparison multigps.xml @ 21:5cdc2d65656b draft

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Uploaded
author iuc
date Tue, 04 Apr 2017 21:20:24 -0400
parents dc52c7cb8d39
children 9c13cdf2ed1e
comparison
equal deleted inserted replaced
20:dc52c7cb8d39 21:5cdc2d65656b
173 line_items = [signal, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type] 173 line_items = [signal, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type]
174 fixedreadcount_cond = signal_items['fixedreadcount_cond'] 174 fixedreadcount_cond = signal_items['fixedreadcount_cond']
175 fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select'] 175 fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select']
176 if fixedreadcount_select == 'yes': 176 if fixedreadcount_select == 'yes':
177 line_items.append(fixedreadcount_cond['fixedreadcount']) 177 line_items.append(fixedreadcount_cond['fixedreadcount'])
178 fh.write('%s\n' % '\t'.join(line_items) 178 fh.write('%s\n' % '\t'.join(line_items))
179 for control_items in condition_items['control_repeat']: 179 for control_items in condition_items['control_repeat']:
180 control = control_items['control'] 180 control = control_items['control']
181 experiment_type = control_items['experiment_type'] 181 experiment_type = control_items['experiment_type']
182 line_items = [control, 'Control', control.ext.upper(), cond_i] 182 line_items = [control, 'Control', control.ext.upper(), cond_i]
183 specify_replicate_name_cond = control_items['specify_replicate_name_cond'] 183 specify_replicate_name_cond = control_items['specify_replicate_name_cond']
187 line_items.append(experiment_type) 187 line_items.append(experiment_type)
188 fixedreadcount_cond = control_items['fixedreadcount_cond'] 188 fixedreadcount_cond = control_items['fixedreadcount_cond']
189 fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select'] 189 fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select']
190 if fixedreadcount_select) == 'yes': 190 if fixedreadcount_select) == 'yes':
191 line_items.append(fixedreadcount_cond['fixedreadcount']) 191 line_items.append(fixedreadcount_cond['fixedreadcount'])
192 fh.write('%s\n' % '\t'.join(line_items) 192 fh.write('%s\n' % '\t'.join(line_items))
193 fh.close() 193 fh.close()
194 ]]> 194 ]]>
195 </configfile> 195 </configfile>
196 </configfiles> 196 </configfiles>
197 <inputs> 197 <inputs>