annotate README.rst @ 25:b3eef7e04ea9 draft

Uploaded
author iuc
date Tue, 04 Apr 2017 21:38:01 -0400
parents 60961854966f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
60961854966f Uploaded
iuc
parents:
diff changeset
1 MultiGPS wrapper for Galaxy
60961854966f Uploaded
iuc
parents:
diff changeset
2 ================================
60961854966f Uploaded
iuc
parents:
diff changeset
3
60961854966f Uploaded
iuc
parents:
diff changeset
4 * http://mahonylab.org/software/multigps/
60961854966f Uploaded
iuc
parents:
diff changeset
5
60961854966f Uploaded
iuc
parents:
diff changeset
6 MultiGPS performs significant EM optimization of binding events along the genome and across experimental
60961854966f Uploaded
iuc
parents:
diff changeset
7 conditions, and it integrates motif-finding via MEME. The tool loads all data into memory, so the potential
60961854966f Uploaded
iuc
parents:
diff changeset
8 exists for time and memory intensive analyses if running over many conditions or large datasets.
60961854966f Uploaded
iuc
parents:
diff changeset
9
60961854966f Uploaded
iuc
parents:
diff changeset
10 Setting the memory allocation in Galaxy for this tool is handled using the <env id="_JAVA_OPTIONS"> tag for
60961854966f Uploaded
iuc
parents:
diff changeset
11 a selected job runner in the job_conf.xml file.
60961854966f Uploaded
iuc
parents:
diff changeset
12
60961854966f Uploaded
iuc
parents:
diff changeset
13 License
60961854966f Uploaded
iuc
parents:
diff changeset
14 -------
60961854966f Uploaded
iuc
parents:
diff changeset
15
60961854966f Uploaded
iuc
parents:
diff changeset
16 MIT
60961854966f Uploaded
iuc
parents:
diff changeset
17