Mercurial > repos > iuc > mothur_venn

comparison venn.xml @ 4:35c0f00bf01d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:43:27 -0400
parents cf4bae168475
children
comparison
equal deleted inserted replaced
3:cf4bae168475 4:35c0f00bf01d
80 <option value="4" selected="true">4</option> 80 <option value="4" selected="true">4</option>
81 <option value="true">true</option> 81 <option value="true">true</option>
82 </param> 82 </param>
83 <param name="fontsize" type="integer" value="24" label="fontsize - Fontsize (default is 24)"/> 83 <param name="fontsize" type="integer" value="24" label="fontsize - Fontsize (default is 24)"/>
84 <param name="sharedotus" type="boolean" falsevalue="false" truevalue="true" checked="true" label="sharedotus - This parameter can be used with the sharedsobs calculator to get the names of the OTUs in each section of the venn diagram. Default=T"/> 84 <param name="sharedotus" type="boolean" falsevalue="false" truevalue="true" checked="true" label="sharedotus - This parameter can be used with the sharedsobs calculator to get the names of the OTUs in each section of the venn diagram. Default=T"/>
85 <expand macro="param-savelog"/>
85 </inputs> 86 </inputs>
86 <outputs> 87 <outputs>
87 <collection name="sharedotus_out" type="list" label="${tool.name} on ${on_string}: sharedotus"> 88 <collection name="sharedotus_out" type="list" label="${tool.name} on ${on_string}: sharedotus">
88 <filter>sharedotus</filter> 89 <filter>sharedotus</filter>
89 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.sharedotus" format="tabular"/> 90 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.sharedotus" format="tabular"/>
103 <element name="0.05.sharedsobs.forest-pasture" md5="7513c9df64477a08b69f0d4665011e80" ftype="tabular" /> 104 <element name="0.05.sharedsobs.forest-pasture" md5="7513c9df64477a08b69f0d4665011e80" ftype="tabular" />
104 </output_collection> 105 </output_collection>
105 <output_collection name="svgs_out" count="72"> 106 <output_collection name="svgs_out" count="72">
106 <element name="0.05.sharedsobs.forest-pasture" md5="e2dc0d5485520f5b22aa185ba91b123e" ftype="svg" /> 107 <element name="0.05.sharedsobs.forest-pasture" md5="e2dc0d5485520f5b22aa185ba91b123e" ftype="svg" />
107 </output_collection> 108 </output_collection>
109 <param name="savelog" value="true"/>
108 <expand macro="logfile-test"/> 110 <expand macro="logfile-test"/>
109 </test> 111 </test>
110 <test><!-- test with list file --> 112 <test><!-- test with list file -->
111 <param name="source" value="similarity"/> 113 <param name="source" value="similarity"/>
112 <param name="otu" value="amazon.an.list" ftype="mothur.list"/> 114 <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
113 <param name="calc" value="sobs,chao,ace"/> 115 <param name="calc" value="sobs,chao,ace"/>
114 <param name="groups" value="forest,pasture"/> 116 <param name="groups" value="forest,pasture"/>
115 <output_collection name="svgs_out" count="108"> 117 <output_collection name="svgs_out" count="108">
116 <element name=".0.45.ace" md5="d69778f507939bc2f5d2bbc3a0088f21" ftype="svg"/> 118 <element name=".0.45.ace" md5="d69778f507939bc2f5d2bbc3a0088f21" ftype="svg"/>
117 </output_collection> 119 </output_collection>
120 <param name="savelog" value="true"/>
118 <expand macro="logfile-test"/> 121 <expand macro="logfile-test"/>
119 </test> 122 </test>
120 </tests> 123 </tests>
121 <help><![CDATA[ 124 <help><![CDATA[
122 125