Mercurial > repos > iuc > mothur_tree_shared

diff tree.shared.xml @ 5:466897b7c726 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:08:21 -0400
parents 8d6cd6767107
children
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--- a/tree.shared.xml	Wed Feb 14 11:51:15 2018 -0500
+++ b/tree.shared.xml	Tue Mar 20 14:08:21 2018 -0400
@@ -105,6 +105,7 @@
             <option value="jclass" selected="true">jclass - Community Membership Similarity the traditional Jaccard similarity coefficient based on the observed richness</option>
             <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue &amp; Clayton theta similarity coefficient</option>
         </param>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -121,6 +122,7 @@
             <param name="source" value="phylip"/>
             <param name="dist" value="env.dist"/>
             <output name="tre" md5="c74a88ed448aad2d07059eda0b4161e9" ftype="mothur.tre"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared and subsampling -->
@@ -131,6 +133,7 @@
             <output_collection name="trefiles" count="108">
                 <element name="jclass.0.32.all" md5="b8adfa6e41397b3815768f987836d102" ftype="mothur.tre"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared and label and group select and all calculators -->
@@ -142,6 +145,7 @@
             <output_collection name="trefiles" count="117">
                 <element name="canberra.0.32" md5="477b061d738d24a7476dd4c90d9666cf" ftype="mothur.tre"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with column and name file -->
@@ -149,6 +153,7 @@
             <param name="dist" value="amazon.pair.dist"/>
             <param name="name" value="amazon1.names"/>
             <output name="tre" md5="33cc8cb433f123e49b33b998186b74ed" ftype="mothur.tre"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>