Mercurial > repos > iuc > mothur_summary_single

diff summary.single.xml @ 5:ef3546864e3a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:39:36 -0400
parents c4db2a4fdb42
children 52123c2bef29
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--- a/summary.single.xml	Wed Feb 14 10:10:10 2018 -0500
+++ b/summary.single.xml	Tue Mar 20 13:39:36 2018 -0400
@@ -99,6 +99,7 @@
             <when value="no"/>
         </conditional>
         <param name="groupmode" type="boolean" truevalue="true" falsevalue="false" checked="true" label="groupmode - Collate shared summary results in one file" help="If false, create a summary file per group."/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -117,6 +118,7 @@
         <test><!-- test with shared and default params -->
             <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
             <output name="summary" md5="eaf5304b383c3c5764193ac7f49589db" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with label select and all calculators -->
@@ -124,6 +126,7 @@
             <param name="label" value="0.05,0.22,0.32"/>
             <param name="calc" value="ace,bootstrap,chao,jack,sobs,simpsoneven,shannoneven,heip,smithwilson,bergerparker,coverage,goodscoverage,simpson,invsimpson,qstat,shannon,npshannon,boneh,efron,shen,solow,logseries,geometric,bstick,nseqs"/>
             <output name="summary" md5="06039951e867e7d397db08aeb668f94f" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared and not groupmode -->
@@ -132,6 +135,7 @@
             <output_collection name="summaryfiles" count="2">
                 <element name="forest" md5="96e2c1213f25d6c342ba87ab3d2de6bf" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with rabund and subsample -->
@@ -153,6 +157,7 @@
                     <has_text text="0.05"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>