Mercurial > repos > iuc > mothur_sub_sample

diff sub.sample.xml @ 4:90c49ac0776e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:16:54 -0400
parents 1f5904c5ee42
children 5986c72bbe25
line wrap: on
line diff
--- a/sub.sample.xml	Wed Feb 14 10:11:07 2018 -0500
+++ b/sub.sample.xml	Tue Mar 20 14:16:54 2018 -0400
@@ -144,6 +144,7 @@
         <param name="size" type="integer" value="" min="1" optional="true" label="size - If set, the number of samples to pick"/>
         <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/>
         <param name="taxonomy" type="data" format="mothur.seq.taxonomy,mothur.ref.taxonomy" optional="true" label="taxonomy - allows a taxonomy file"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -186,6 +187,7 @@
                    </assert_contents>
                 </element>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with list and group file and label select-->
@@ -203,6 +205,7 @@
                    </assert_contents>
                 </element>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with fasta and taxonomy -->
@@ -219,6 +222,7 @@
                     <has_line_matching expression="^U[0-9]+\tBacteria.*$"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with fasta and group file and name file -->
@@ -243,6 +247,7 @@
                     <has_line_matching expression="^U[0-9]+\tU[0-9]+$"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared -->
@@ -260,6 +265,7 @@
                     </assert_contents>
                 </element>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with rabund -->
@@ -271,6 +277,7 @@
                     <has_text text="0.55"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with sabund -->
@@ -282,6 +289,7 @@
                     <has_text text="0.55"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>