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comparison README @ 1:87bee516388b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author iuc
date Fri, 19 May 2017 04:35:10 -0400
parents 089c0f0c6c18
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0:089c0f0c6c18 1:87bee516388b
2 2
3 The Mothur Tool Suite repository: 3 The Mothur Tool Suite repository:
4 - Provides Mothur wrappers for the Mothur tools 4 - Provides Mothur wrappers for the Mothur tools
5 - Downloads and builds Mothur and all its dependencies on the Linux or Mac operating system 5 - Downloads and builds Mothur and all its dependencies on the Linux or Mac operating system
6 6
7 Requirements: 7 Installing Tools via the API:
8 - Build utilities (make, GCC, gfortran, etc) 8 This is a rather large tool suite, if you are having problems installing via the toolshed, try using the API instead
9 - Install ephemeris: pip install ephemeris -U
10 - Use ephemeris to install tools: shed_install -a <your admin API key> -t tools.yaml
11 - (You can find a tools.yaml you can use in this repo as well)
9 12
10 Installing reference data from silva and greengenes: 13 Installing reference data from silva and greengenes:
11 - There is a Galaxy datamanager for available for Mothur 14 - There is a Galaxy datamanager for available for Mothur
12 15
13 RDP reference file (modified for mothur): 16 RDP reference file (modified for mothur):