Mercurial > repos > iuc > mothur_split_abund

comparison split.abund.xml @ 5:607eee4176b0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:41:12 -0400
parents ef779f6cb288
children
comparison
equal deleted inserted replaced
4:195956184185 5:607eee4176b0
81 </param> 81 </param>
82 </when> 82 </when>
83 <when value="no"/> 83 <when value="no"/>
84 </conditional> 84 </conditional>
85 <param name="accnos" type="boolean" truevalue="true" falsevalue="false" checked="false" label="accnos - Produce rare and abundant Accession outputs"/> 85 <param name="accnos" type="boolean" truevalue="true" falsevalue="false" checked="false" label="accnos - Produce rare and abundant Accession outputs"/>
86 <expand macro="param-savelog"/>
86 </inputs> 87 </inputs>
87 <outputs> 88 <outputs>
88 <expand macro="logfile-output"/> 89 <expand macro="logfile-output"/>
89 <data name="abund_fasta" format_source="fasta" from_work_dir="*abund.fasta" label="${tool.name} on ${on_string}: abund.fasta"> 90 <data name="abund_fasta" format_source="fasta" from_work_dir="*abund.fasta" label="${tool.name} on ${on_string}: abund.fasta">
90 <filter>search['type'] != 'list'</filter> 91 <filter>search['type'] != 'list'</filter>
168 <output name="rare_fasta" md5="bff57d4585fe4e6d8b86c949f3e17e1a" ftype="fasta"/> 169 <output name="rare_fasta" md5="bff57d4585fe4e6d8b86c949f3e17e1a" ftype="fasta"/>
169 <output name="abund_count" md5="288e5222f3d454b67761fca3c8c944b1" ftype="mothur.count_table"/> 170 <output name="abund_count" md5="288e5222f3d454b67761fca3c8c944b1" ftype="mothur.count_table"/>
170 <output name="rare_count" md5="dc7be856861ef53faa73a5312b0661c3" ftype="mothur.count_table"/> 171 <output name="rare_count" md5="dc7be856861ef53faa73a5312b0661c3" ftype="mothur.count_table"/>
171 <output name="abund_accnos" md5="47c918c965d41fea12bad748afe60833" ftype="mothur.accnos"/> 172 <output name="abund_accnos" md5="47c918c965d41fea12bad748afe60833" ftype="mothur.accnos"/>
172 <output name="rare_accnos" md5="3537f34f96d276e72e03f6d6a4994fd9" ftype="mothur.accnos"/> 173 <output name="rare_accnos" md5="3537f34f96d276e72e03f6d6a4994fd9" ftype="mothur.accnos"/>
174 <param name="savelog" value="true"/>
173 <expand macro="logfile-test"/> 175 <expand macro="logfile-test"/>
174 </test> 176 </test>
175 <test><!-- test with name file and accnos output --> 177 <test><!-- test with name file and accnos output -->
176 <param name="fasta" value="amazon.fasta" ftype="fasta"/> 178 <param name="fasta" value="amazon.fasta" ftype="fasta"/>
177 <param name="type" value="name"/> 179 <param name="type" value="name"/>
182 <output name="rare_fasta" md5="bff57d4585fe4e6d8b86c949f3e17e1a" ftype="fasta"/> 184 <output name="rare_fasta" md5="bff57d4585fe4e6d8b86c949f3e17e1a" ftype="fasta"/>
183 <output name="abund_names" md5="41560e422d53c83cb482ef868409136c" ftype="mothur.names"/> 185 <output name="abund_names" md5="41560e422d53c83cb482ef868409136c" ftype="mothur.names"/>
184 <output name="rare_names" md5="12527477b2c1891c9278f417a5ece45d" ftype="mothur.names"/> 186 <output name="rare_names" md5="12527477b2c1891c9278f417a5ece45d" ftype="mothur.names"/>
185 <output name="abund_accnos" md5="47c918c965d41fea12bad748afe60833" ftype="mothur.accnos"/> 187 <output name="abund_accnos" md5="47c918c965d41fea12bad748afe60833" ftype="mothur.accnos"/>
186 <output name="rare_accnos" md5="3537f34f96d276e72e03f6d6a4994fd9" ftype="mothur.accnos"/> 188 <output name="rare_accnos" md5="3537f34f96d276e72e03f6d6a4994fd9" ftype="mothur.accnos"/>
189 <param name="savelog" value="true"/>
187 <expand macro="logfile-test"/> 190 <expand macro="logfile-test"/>
188 </test> 191 </test>
189 <test><!-- test with name file and accnos output with groups--> 192 <test><!-- test with name file and accnos output with groups-->
190 <param name="fasta" value="amazon.fasta" ftype="fasta"/> 193 <param name="fasta" value="amazon.fasta" ftype="fasta"/>
191 <param name="type" value="name"/> 194 <param name="type" value="name"/>
217 <element name="pasture" md5="46ac8394df6b3376b41619b07720ee18" ftype="mothur.groups"/> 220 <element name="pasture" md5="46ac8394df6b3376b41619b07720ee18" ftype="mothur.groups"/>
218 </output_collection> 221 </output_collection>
219 <output_collection name="rare_groups_coll" count="2"> 222 <output_collection name="rare_groups_coll" count="2">
220 <element name="pasture" md5="5907bd7fe874a29fcc57930ecb0f65d1" ftype="mothur.groups"/> 223 <element name="pasture" md5="5907bd7fe874a29fcc57930ecb0f65d1" ftype="mothur.groups"/>
221 </output_collection> 224 </output_collection>
225 <param name="savelog" value="true"/>
222 <expand macro="logfile-test"/> 226 <expand macro="logfile-test"/>
223 </test> 227 </test>
224 <test><!-- test with list --> 228 <test><!-- test with list -->
225 <param name="fasta" value="amazon.fasta" ftype="fasta"/> 229 <param name="fasta" value="amazon.fasta" ftype="fasta"/>
226 <param name="type" value="list"/> 230 <param name="type" value="list"/>
252 <element name="0.05.forest" md5="fd404451b15195cadb637751a463a077" ftype="mothur.groups"/> 256 <element name="0.05.forest" md5="fd404451b15195cadb637751a463a077" ftype="mothur.groups"/>
253 </output_collection> 257 </output_collection>
254 <output_collection name="rare_groups_coll" count="72"> 258 <output_collection name="rare_groups_coll" count="72">
255 <element name="0.05.pasture" md5="ddcf8bc26a0815fd366deceec64133ee" ftype="mothur.groups"/> 259 <element name="0.05.pasture" md5="ddcf8bc26a0815fd366deceec64133ee" ftype="mothur.groups"/>
256 </output_collection> 260 </output_collection>
261 <param name="savelog" value="true"/>
257 <expand macro="logfile-test"/> 262 <expand macro="logfile-test"/>
258 </test> 263 </test>
259 <test><!-- test with list and label and group select--> 264 <test><!-- test with list and label and group select-->
260 <param name="fasta" value="amazon.fasta" ftype="fasta"/> 265 <param name="fasta" value="amazon.fasta" ftype="fasta"/>
261 <param name="type" value="list"/> 266 <param name="type" value="list"/>
288 <element name="0.05.forest" md5="fd404451b15195cadb637751a463a077" ftype="mothur.groups"/> 293 <element name="0.05.forest" md5="fd404451b15195cadb637751a463a077" ftype="mothur.groups"/>
289 </output_collection> 294 </output_collection>
290 <output_collection name="rare_groups_coll" count="4"> 295 <output_collection name="rare_groups_coll" count="4">
291 <element name="0.05.forest" md5="53a2f24a4d69f92661b94bc4b813ce69" ftype="mothur.groups"/> 296 <element name="0.05.forest" md5="53a2f24a4d69f92661b94bc4b813ce69" ftype="mothur.groups"/>
292 </output_collection> 297 </output_collection>
298 <param name="savelog" value="true"/>
293 <expand macro="logfile-test"/> 299 <expand macro="logfile-test"/>
294 </test> 300 </test>
295 </tests> 301 </tests>
296 <help><![CDATA[ 302 <help><![CDATA[
297 303