Mercurial > repos > iuc > mothur_sort_seqs
diff sort.seqs.xml @ 5:805e64a3ef00 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 13:44:58 -0400 |
| parents | af77b7eda3ce |
| children |
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--- a/sort.seqs.xml Wed Feb 14 11:20:09 2018 -0500 +++ b/sort.seqs.xml Tue Mar 20 13:44:58 2018 -0400 @@ -60,6 +60,7 @@ <param name="accnos" type="data" format="mothur.accnos" optional="true" label="accnos - sort" help="format must be mothur.accnos"/> <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="format must be mothur.count_table (generated by count.seqs)"/> <param name="large" type="boolean" checked="false" truevalue="true" falsevalue="false" label="large - Datasets are large and may not fit in RAM"/> + <expand macro="param-savelog"/> </inputs> <outputs> <expand macro="logfile-output"/> @@ -86,22 +87,26 @@ <test> <param name="fasta_in" value="amazon.fasta" ftype="fasta"/> <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/> + <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> <test> <param name="qfile_in" value="Mock_S280_L001_R1_001_small.trim.contigs.qual" ftype="qual454"/> <output name="qfile_out" md5="abed9d1811786c810a12fd00a376cee4" ftype="qual454"/> + <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> <test> <param name="group_in" value="amazon.groups" ftype="mothur.groups"/> <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/> + <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> <test> <param name="fasta_in" value="amazon.fasta" ftype="fasta"/> <param name="count" value="amazon.count_table" ftype="mothur.count_table"/> <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/> + <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> <test><!-- test with multiple file types input --> @@ -111,6 +116,7 @@ <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/> <output name="qfile_out" md5="abed9d1811786c810a12fd00a376cee4" ftype="qual454"/> <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/> + <param name="savelog" value="true"/> <expand macro="logfile-test"/> </test> </tests>
