diff sort.seqs.xml @ 5:805e64a3ef00 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:44:58 -0400
parents af77b7eda3ce
children
line wrap: on
line diff
--- a/sort.seqs.xml	Wed Feb 14 11:20:09 2018 -0500
+++ b/sort.seqs.xml	Tue Mar 20 13:44:58 2018 -0400
@@ -60,6 +60,7 @@
         <param name="accnos" type="data" format="mothur.accnos" optional="true" label="accnos - sort" help="format must be mothur.accnos"/>
         <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="format must be mothur.count_table (generated by count.seqs)"/>
         <param name="large" type="boolean" checked="false" truevalue="true" falsevalue="false" label="large - Datasets are large and may not fit in RAM"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -86,22 +87,26 @@
         <test>
             <param name="fasta_in" value="amazon.fasta" ftype="fasta"/>
             <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
             <param name="qfile_in" value="Mock_S280_L001_R1_001_small.trim.contigs.qual" ftype="qual454"/>
             <output name="qfile_out" md5="abed9d1811786c810a12fd00a376cee4" ftype="qual454"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
             <param name="group_in" value="amazon.groups" ftype="mothur.groups"/>
             <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
             <param name="fasta_in" value="amazon.fasta" ftype="fasta"/>
             <param name="count" value="amazon.count_table" ftype="mothur.count_table"/>
             <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with multiple file types input -->
@@ -111,6 +116,7 @@
             <output name="fasta_out" md5="0bc9320647234e8367c3b1b654f9302d" ftype="fasta"/>
             <output name="qfile_out" md5="abed9d1811786c810a12fd00a376cee4" ftype="qual454"/>
             <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>