Mercurial > repos > iuc > mothur_shhh_seqs

comparison shhh.seqs.xml @ 4:7afaa6a1ab4a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:04:20 -0400
parents 996697eb1f9e
children dba8318f7a4d
comparison
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3:996697eb1f9e 4:7afaa6a1ab4a
30 <inputs> 30 <inputs>
31 <param name="fasta" type="data" format="fasta" label="fasta - Sequences" help=""/> 31 <param name="fasta" type="data" format="fasta" label="fasta - Sequences" help=""/>
32 <param name="name" type="data" format="mothur.names" label="name - Sequences Name reference"/> 32 <param name="name" type="data" format="mothur.names" label="name - Sequences Name reference"/>
33 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Name reference"/> 33 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Name reference"/>
34 <param name="sigma" type="float" value=".01" min="0.0" max="1.0" label="sigma" help="default .01"/> 34 <param name="sigma" type="float" value=".01" min="0.0" max="1.0" label="sigma" help="default .01"/>
35 <expand macro="param-savelog"/>
35 </inputs> 36 </inputs>
36 <outputs> 37 <outputs>
37 <expand macro="logfile-output"/> 38 <expand macro="logfile-output"/>
38 <data name="shhh_fasta" format_source="fasta" from_work_dir="fasta*.shhh_seqs.fasta" label="${tool.name} on ${on_string}: shhh.fasta"/> 39 <data name="shhh_fasta" format_source="fasta" from_work_dir="fasta*.shhh_seqs.fasta" label="${tool.name} on ${on_string}: shhh.fasta"/>
39 <data name="shhh_names" format="mothur.names" from_work_dir="fasta*.shhh_seqs.names" label="${tool.name} on ${on_string}: shhh.names"/> 40 <data name="shhh_names" format="mothur.names" from_work_dir="fasta*.shhh_seqs.names" label="${tool.name} on ${on_string}: shhh.names"/>
44 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" ftype="mothur.align"/> 45 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" ftype="mothur.align"/>
45 <param name="name" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head.names"/> 46 <param name="name" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head.names"/>
46 <output name="shhh_fasta" md5="0169152fa33b588cabf3c3b932cc6018" ftype="mothur.align"/> 47 <output name="shhh_fasta" md5="0169152fa33b588cabf3c3b932cc6018" ftype="mothur.align"/>
47 <output name="shhh_names" md5="f3bc939b899d91f7cf3b822c5a822805" ftype="mothur.names"/> 48 <output name="shhh_names" md5="f3bc939b899d91f7cf3b822c5a822805" ftype="mothur.names"/>
48 <output name="shhh_map" md5="0bcfe53ec754878ca5f6a126114671e1" ftype="txt"/> 49 <output name="shhh_map" md5="0bcfe53ec754878ca5f6a126114671e1" ftype="txt"/>
50 <param name="savelog" value="true"/>
49 <expand macro="logfile-test"/> 51 <expand macro="logfile-test"/>
50 </test> 52 </test>
51 </tests> 53 </tests>
52 <help><![CDATA[ 54 <help><![CDATA[
53 55