# HG changeset patch
# User iuc
# Date 1604608629 0
# Node ID 98a736c61a4afce6a932d90c15614d12261df48e
# Parent  51be326f0a6c412cb8bec52a7cff96cbbcfd14d6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"

diff -r 51be326f0a6c -r 98a736c61a4a macros.xml
--- a/macros.xml	Sun Dec 01 00:42:06 2019 +0000
+++ b/macros.xml	Thu Nov 05 20:37:09 2020 +0000
@@ -15,7 +15,7 @@
             <exit_code range="1:" level="fatal"/>
         </stdio>
     </xml>
-    <token name="@SHELL_OPTIONS@">set -o pipefail;</token>
+    <token name="@SHELL_OPTIONS@">set -o pipefail; export TERM=vt100; </token>
 
 
     <!-- Input parameters -->
diff -r 51be326f0a6c -r 98a736c61a4a seq.error.xml
--- a/seq.error.xml	Sun Dec 01 00:42:06 2019 +0000
+++ b/seq.error.xml	Thu Nov 05 20:37:09 2020 +0000
@@ -163,7 +163,7 @@
 **Command Documentation**
 
 The seq.error_ command evaluates error rate for sequences by comparing to the fasta-formatted template_alignment_.
-This is demonstrated in https://www.mothur.org/wiki/Schloss_SOP#Error_analysis
+This is demonstrated in https://mothur.org/wiki/miseq_sop/#assessing-error-rates
 
 .. _template_alignment: https://www.mothur.org/wiki/Alignment_database
 .. _seq.error: https://www.mothur.org/wiki/Seq.error