Mercurial > repos > iuc > mothur_screen_seqs

diff screen.seqs.xml @ 5:921ff33138df draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:46:28 -0400
parents 2159457a4586
children 0b91839225a9
line wrap: on
line diff
--- a/screen.seqs.xml	Wed Feb 14 10:06:49 2018 -0500
+++ b/screen.seqs.xml	Tue Mar 20 13:46:28 2018 -0400
@@ -141,6 +141,7 @@
             </when>
             <when value="no"/>
         </conditional>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -172,6 +173,7 @@
             <param name="maxlength" value="275"/>
             <output name="fasta_out" file="Mock_S280_L001_R1_001_small.trim.contigs.good.fasta" ftype="fasta"/>
             <output name="bad_accnos" file="Mock_S280_L001_R1_001_small.trim.contigs.bad.accnos" ftype="mothur.accnos"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with count table -->
@@ -202,6 +204,7 @@
                     <has_text text="length"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test screening with contigsreport -->
@@ -226,6 +229,7 @@
                     <has_text text="M00967_43_000000000-A3JHG_1_1101_15923_3823"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test screening with alignment report -->
@@ -255,6 +259,7 @@
                     <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>