Mercurial > repos > iuc > mothur_remove_rare

diff remove.rare.xml @ 6:be26751f7d10 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:35:12 -0400
parents 13ef4cafa56d
children
line wrap: on
line diff
--- a/remove.rare.xml	Wed Feb 14 11:23:42 2018 -0500
+++ b/remove.rare.xml	Tue Mar 20 13:35:12 2018 -0400
@@ -88,6 +88,7 @@
             </when>
         </conditional>
         <param name="nseqs" type="integer" value="1" min="0" label="nseqs - Number of sequences cutoff for an otu to be deemed rare"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -107,6 +108,7 @@
             <param name="source" value="list"/>
             <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
             <output name="pick_otu" md5="4779791c9b0ef95a54083ee1a6ad6c8d" ftype="mothur.list"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with list and group file -->
@@ -116,6 +118,7 @@
             <param name="groups" value="forest,pasture"/>
             <output name="pick_otu" md5="4779791c9b0ef95a54083ee1a6ad6c8d" ftype="mothur.list"/>
             <output name="pick_group" md5="9561ba470c769670ab6d92563a44027f" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared file -->
@@ -124,6 +127,7 @@
             <output_collection name="pick_shared" count="36">
                 <element name="0.38" md5="e58da633dd16f0cb6472d6c6b3318c9f" ftype="mothur.shared"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared file and label/group select -->
@@ -135,12 +139,14 @@
             <output_collection name="pick_shared" count="3">
                 <element name="0.22" md5="46d97e6f97e7909d72d09a1726655539" ftype="mothur.shared"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with rabund/sabund file -->
             <param name="source" value="default"/>
             <param name="otu" value="amazon.an.sabund" ftype="mothur.sabund"/>
             <output name="pick_otu" md5="ca842ed3ef543d3dd76fd9089cd87c46" ftype="mothur.sabund"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>