Mercurial > repos > iuc > mothur_remove_otus

comparison remove.otus.xml @ 4:7ee5368e38d2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:11:09 -0400
parents a7ee6371e854
children
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3:a7ee6371e854 4:7ee5368e38d2
53 </when> 53 </when>
54 <when value="in_other"> 54 <when value="in_other">
55 <param name="otu" type="data" format="mothur.cons.taxonomy,mothur.otu.corr,mothur.axes" label="cons.taxonomy/otu.corr/axes file" help="constaxonomy file can be obtained by the running classify.otu tool, otucorr from otu.association tool, and corraxes from corr.axes command"/> 55 <param name="otu" type="data" format="mothur.cons.taxonomy,mothur.otu.corr,mothur.axes" label="cons.taxonomy/otu.corr/axes file" help="constaxonomy file can be obtained by the running classify.otu tool, otucorr from otu.association tool, and corraxes from corr.axes command"/>
56 </when> 56 </when>
57 </conditional> 57 </conditional>
58 <expand macro="param-savelog"/>
58 </inputs> 59 </inputs>
59 <outputs> 60 <outputs>
60 <expand macro="logfile-output"/> 61 <expand macro="logfile-output"/>
61 <data name="pick_out" format_source="otu" from_work_dir="infile.otu*.pick.dat" label="${tool.name} on ${on_string}: pick"/> 62 <data name="pick_out" format_source="otu" from_work_dir="infile.otu*.pick.dat" label="${tool.name} on ${on_string}: pick"/>
62 </outputs> 63 </outputs>
72 <has_text text="U68686"/> 73 <has_text text="U68686"/>
73 <has_text text="0.22"/> 74 <has_text text="0.22"/>
74 <not_has_text text="0.03"/> 75 <not_has_text text="0.03"/>
75 </assert_contents> 76 </assert_contents>
76 </output> 77 </output>
78 <param name="savelog" value="true"/>
77 <expand macro="logfile-test"/> 79 <expand macro="logfile-test"/>
78 </test> 80 </test>
79 <test><!-- test with constaxonomy/otucorr/corraxes file --> 81 <test><!-- test with constaxonomy/otucorr/corraxes file -->
80 <param name="accnos" value="amazon.accnos.otulabels"/> 82 <param name="accnos" value="amazon.accnos.otulabels"/>
81 <param name="intype" value="in_other"/> 83 <param name="intype" value="in_other"/>
84 <assert_contents> 86 <assert_contents>
85 <expand macro="test-axes-format"/> 87 <expand macro="test-axes-format"/>
86 <has_text text="U68686"/> 88 <has_text text="U68686"/>
87 </assert_contents> 89 </assert_contents>
88 </output> 90 </output>
91 <param name="savelog" value="true"/>
89 <expand macro="logfile-test"/> 92 <expand macro="logfile-test"/>
90 </test> 93 </test>
91 </tests> 94 </tests>
92 <help><![CDATA[ 95 <help><![CDATA[
93 96