Mercurial > repos > iuc > mothur_remove_lineage

comparison remove.lineage.xml @ 5:3a7f96ed57ff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:48:15 -0400
parents 702f118f52f9
children
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4:8bcaff969d2a 5:3a7f96ed57ff
118 <param name="alignreport_in" type="data" format="mothur.align.report" optional="true" label="alignreport - Align Report"/> 118 <param name="alignreport_in" type="data" format="mothur.align.report" optional="true" label="alignreport - Align Report"/>
119 <param name="list_in" type="data" format="mothur.list" optional="true" label="list - OTU List"/> 119 <param name="list_in" type="data" format="mothur.list" optional="true" label="list - OTU List"/>
120 <param name="name_in" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference"/> 120 <param name="name_in" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference"/>
121 <param name="dups" type="boolean" truevalue="true" falsevalue="false" checked="true" label="dups - Apply to duplicate names"/> 121 <param name="dups" type="boolean" truevalue="true" falsevalue="false" checked="true" label="dups - Apply to duplicate names"/>
122 <param name="count" type="data" format="mothur.count_table" optional="true" help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. It can also contain group information"/> 122 <param name="count" type="data" format="mothur.count_table" optional="true" help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. It can also contain group information"/>
123 <expand macro="param-savelog"/>
123 </inputs> 124 </inputs>
124 <outputs> 125 <outputs>
125 <expand macro="logfile-output"/> 126 <expand macro="logfile-output"/>
126 <data name="taxonomy_out" format="mothur.seq.taxonomy" from_work_dir="file.taxonomy*.pick.*" label="${tool.name} on ${on_string}: pick.taxonomy"/> 127 <data name="taxonomy_out" format="mothur.seq.taxonomy" from_work_dir="file.taxonomy*.pick.*" label="${tool.name} on ${on_string}: pick.taxonomy"/>
127 <data format_source="fasta_in" name="fasta_out" from_work_dir="fasta_in*.pick.*" label="${tool.name} on ${on_string}: pick.fasta"> 128 <data format_source="fasta_in" name="fasta_out" from_work_dir="fasta_in*.pick.*" label="${tool.name} on ${on_string}: pick.fasta">