Mercurial > repos > iuc > mothur_remove_groups

comparison remove.groups.xml @ 4:14b91d604253 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:43:49 -0400
parents 7390f41f4e6b
children
comparison
equal deleted inserted replaced
3:7390f41f4e6b 4:14b91d604253
85 <filter type="data_meta" ref="shared_in" key="groups"/> 85 <filter type="data_meta" ref="shared_in" key="groups"/>
86 </options> 86 </options>
87 </param> 87 </param>
88 </when> 88 </when>
89 </conditional> 89 </conditional>
90 <expand macro="param-savelog"/>
90 </inputs> 91 </inputs>
91 <outputs> 92 <outputs>
92 <expand macro="logfile-output"/> 93 <expand macro="logfile-output"/>
93 <data name="fasta_out" format_source="fasta_in" from_work_dir="groupnames_fasta_in*.pick.*" label="${tool.name} on ${on_string}: pick.fasta"> 94 <data name="fasta_out" format_source="fasta_in" from_work_dir="groupnames_fasta_in*.pick.*" label="${tool.name} on ${on_string}: pick.fasta">
94 <filter>groupnames['source'] == 'other' and groupnames['fasta_in']</filter> 95 <filter>groupnames['source'] == 'other' and groupnames['fasta_in']</filter>
126 <param name="shared_in" value="amazon.an.shared"/> 127 <param name="shared_in" value="amazon.an.shared"/>
127 <param name="groups" value="pasture"/> 128 <param name="groups" value="pasture"/>
128 <output_collection name="shared_out" count="36"> 129 <output_collection name="shared_out" count="36">
129 <element name="0.26" md5="c5043237225f0292ce1bfbd2766b96ea" ftype="mothur.shared"/> 130 <element name="0.26" md5="c5043237225f0292ce1bfbd2766b96ea" ftype="mothur.shared"/>
130 </output_collection> 131 </output_collection>
132 <param name="savelog" value="true"/>
131 <expand macro="logfile-test"/> 133 <expand macro="logfile-test"/>
132 </test> 134 </test>
133 <test><!-- test with group file and fasta/names/list/taxonomy files --> 135 <test><!-- test with group file and fasta/names/list/taxonomy files -->
134 <param name="source" value="other"/> 136 <param name="source" value="other"/>
135 <param name="group_in" value="amazon.groups" ftype="mothur.groups"/> 137 <param name="group_in" value="amazon.groups" ftype="mothur.groups"/>
143 <output name="group_out" md5="6d689ead98f3eb1af41f1a78386d0b50" ftype="mothur.groups"/> 145 <output name="group_out" md5="6d689ead98f3eb1af41f1a78386d0b50" ftype="mothur.groups"/>
144 <output name="name_out" md5="55dbcadbb414d95bae8a282a93c10e63" ftype="mothur.names"/> 146 <output name="name_out" md5="55dbcadbb414d95bae8a282a93c10e63" ftype="mothur.names"/>
145 <output_collection name="list_out" count="36"> 147 <output_collection name="list_out" count="36">
146 <element name="0.26" md5="3a92ef76cfdca6618b4016f14cbac5b8" ftype="mothur.list"/> 148 <element name="0.26" md5="3a92ef76cfdca6618b4016f14cbac5b8" ftype="mothur.list"/>
147 </output_collection> 149 </output_collection>
150 <param name="savelog" value="true"/>
148 <expand macro="logfile-test"/> 151 <expand macro="logfile-test"/>
149 </test> 152 </test>
150 <test><!-- test with distance matrices --> 153 <test><!-- test with distance matrices -->
151 <param name="source" value="other"/> 154 <param name="source" value="other"/>
152 <param name="group_in" value="amazon.groups" ftype="mothur.groups"/> 155 <param name="group_in" value="amazon.groups" ftype="mothur.groups"/>
163 <assert_contents> 166 <assert_contents>
164 <expand macro="test-dist-format"/> 167 <expand macro="test-dist-format"/>
165 <has_text text="U68589"/> 168 <has_text text="U68589"/>
166 </assert_contents> 169 </assert_contents>
167 </output> 170 </output>
171 <param name="savelog" value="true"/>
168 <expand macro="logfile-test"/> 172 <expand macro="logfile-test"/>
169 </test> 173 </test>
170 </tests> 174 </tests>
171 <help><![CDATA[ 175 <help><![CDATA[
172 176