Mercurial > repos > iuc > mothur_rarefaction_shared

comparison rarefaction.shared.xml @ 5:d9ef84566b67 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:53:01 -0400
parents 2d1861aaa1d3
children 3e83459c37c8
comparison
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4:d983cca8d5d5 5:d9ef84566b67
92 help="Leave blank to use the size of your smallest group"/> 92 help="Leave blank to use the size of your smallest group"/>
93 <param name="subsampleiters" type="integer" value="0" optional="true" label="subsampleiters - Number of times to run the subsample"/> 93 <param name="subsampleiters" type="integer" value="0" optional="true" label="subsampleiters - Number of times to run the subsample"/>
94 </when> 94 </when>
95 <when value="no"/> 95 <when value="no"/>
96 </conditional> 96 </conditional>
97 <expand macro="param-savelog"/>
97 </inputs> 98 </inputs>
98 <outputs> 99 <outputs>
99 <expand macro="logfile-output"/> 100 <expand macro="logfile-output"/>
100 <data name="rarefaction" format="tabular" from_work_dir="otu.shared.rarefaction" label="${tool.name} on ${on_string}: shared.rarefaction"> 101 <data name="rarefaction" format="tabular" from_work_dir="otu.shared.rarefaction" label="${tool.name} on ${on_string}: shared.rarefaction">
101 <filter>designc['usedesign'] == 'no' and 'sharedobserved' in calc</filter> 102 <filter>designc['usedesign'] == 'no' and 'sharedobserved' in calc</filter>
127 <has_text text="0.22"/> 128 <has_text text="0.22"/>
128 <has_text text="0.33"/> 129 <has_text text="0.33"/>
129 <has_text text="0.55"/> 130 <has_text text="0.55"/>
130 </assert_contents> 131 </assert_contents>
131 </output> 132 </output>
133 <param name="savelog" value="true"/>
132 <expand macro="logfile-test"/> 134 <expand macro="logfile-test"/>
133 </test> 135 </test>
134 <test><!-- test with label, group and calc select --> 136 <test><!-- test with label, group and calc select -->
135 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 137 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
136 <param name="groups" value="forest,pasture"/> 138 <param name="groups" value="forest,pasture"/>
156 <has_text text="0.22"/> 158 <has_text text="0.22"/>
157 <not_has_text text="0.33"/> 159 <not_has_text text="0.33"/>
158 <has_text text="0.55"/> 160 <has_text text="0.55"/>
159 </assert_contents> 161 </assert_contents>
160 </output> 162 </output>
163 <param name="savelog" value="true"/>
161 <expand macro="logfile-test"/> 164 <expand macro="logfile-test"/>
162 </test> 165 </test>
163 <test><!-- test with design file --> 166 <test><!-- test with design file -->
164 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 167 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
165 <param name="usedesign" value="yes"/> 168 <param name="usedesign" value="yes"/>
174 <has_text text="0.22"/> 177 <has_text text="0.22"/>
175 <has_text text="0.33"/> 178 <has_text text="0.33"/>
176 <has_text text="0.55"/> 179 <has_text text="0.55"/>
177 </assert_contents> 180 </assert_contents>
178 </output> 181 </output>
182 <param name="savelog" value="true"/>
179 <expand macro="logfile-test"/> 183 <expand macro="logfile-test"/>
180 </test> 184 </test>
181 <!-- segfaults when subsampling on some files, known bug, devs promise to fix in next release 185 <!-- segfaults when subsampling on some files, known bug, devs promise to fix in next release
182 <test><!- - test with subsampling - -> 186 <test><!- - test with subsampling - ->
183 <param name="otu" value="esophagus.fn.shared" ftype="mothur.shared"/> 187 <param name="otu" value="esophagus.fn.shared" ftype="mothur.shared"/>
217 <has_text text="std"/> 221 <has_text text="std"/>
218 <has_text text="0.14"/> 222 <has_text text="0.14"/>
219 </assert_contents> 223 </assert_contents>
220 </element> 224 </element>
221 </output_collection> 225 </output_collection>
226 <param name="savelog" value="true"/>
222 <expand macro="logfile-test"/> 227 <expand macro="logfile-test"/>
223 </test>--> 228 </test>-->
224 </tests> 229 </tests>
225 <help><![CDATA[ 230 <help><![CDATA[
226 231