Mercurial > repos > iuc > mothur_pcr_seqs

diff pcr.seqs.xml @ 5:405401e66af4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:08:42 -0400
parents 1d43bafb7108
children
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--- a/pcr.seqs.xml	Wed Feb 14 11:52:09 2018 -0500
+++ b/pcr.seqs.xml	Tue Mar 20 14:08:42 2018 -0400
@@ -82,6 +82,7 @@
         <param name="group_in" type="data" format="mothur.groups" optional="true" label="group - Group file"/>
         <param name="pdiffs" type="integer" value="0" min="0" label="pdiffs - number of differences to allow in the forward primers (default 0)"/>
         <param name="rdiffs" type="integer" value="0" min="0" label="rdiffs - number of differences to allow in the reverse primers (default 0)"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -108,6 +109,7 @@
             <param name="start" value="0"/>
             <param name="end" value="0"/>
             <param name="pdiffs" value="0"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
             <output name="pcr_fasta" md5="4f9c3a835bbba51c64fbf86c8a467d0e" ftype="mothur.align"/>
             <output name="scrap_fasta" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.align"/>
@@ -119,6 +121,7 @@
             <param name="ecoli" value="amazon.align_head" ftype="mothur.align"/>
             <param name="name_in" value="amazon.align_head.names"/>
             <param name="pdiffs" value="2"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
             <output name="pcr_fasta" md5="4bef877bd45f47041f3d17dc017f21ea" ftype="mothur.align"/>
             <output name="scrap_fasta" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.align"/>
@@ -133,6 +136,7 @@
             <param name="taxonomy_in" value="amazon.wang.wang.taxonomy" ftype="mothur.seq.taxonomy"/>
             <param name="start" value="5"/>
             <param name="end" value="50"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
             <output name="pcr_fasta" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.align"/>
             <output name="scrap_fasta" md5="0b63807f339dfd88cf958f7b069eba02" ftype="mothur.align"/>