Mercurial > repos > iuc > mothur_pairwise_seqs

comparison pairwise.seqs.xml @ 5:74461a54c0cf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:32:34 -0400
parents cc74f42d74a2
children db4dff18e186
comparison
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4:63a454e01d27 5:74461a54c0cf
68 <param name="output" type="select" label="output - Distance Matrix Output Format" help=""> 68 <param name="output" type="select" label="output - Distance Matrix Output Format" help="">
69 <option value="" selected="true">Column-Formatted Matrix (Default)</option> 69 <option value="" selected="true">Column-Formatted Matrix (Default)</option>
70 <option value="lt">Phylip formatted Lower Triangle Matrix</option> 70 <option value="lt">Phylip formatted Lower Triangle Matrix</option>
71 <option value="square">Phylip formatted Square Matrix</option> 71 <option value="square">Phylip formatted Square Matrix</option>
72 </param> 72 </param>
73 <expand macro="param-savelog"/>
73 </inputs> 74 </inputs>
74 <outputs> 75 <outputs>
75 <expand macro="logfile-output"/> 76 <expand macro="logfile-output"/>
76 <data name="out_dist" format="mothur.pair.dist" from_work_dir="fasta*.dist" label="${tool.name} on ${on_string}: dist"> 77 <data name="out_dist" format="mothur.pair.dist" from_work_dir="fasta*.dist" label="${tool.name} on ${on_string}: dist">
77 <change_format> 78 <change_format>
87 <param name="calc" value=""/> 88 <param name="calc" value=""/>
88 <param name="countends" value=""/> 89 <param name="countends" value=""/>
89 <param name="cutoff" value="0.0"/> 90 <param name="cutoff" value="0.0"/>
90 <param name="setby" value="default"/> 91 <param name="setby" value="default"/>
91 <param name="output" value=""/> 92 <param name="output" value=""/>
93 <param name="savelog" value="true"/>
92 <expand macro="logfile-test"/> 94 <expand macro="logfile-test"/>
93 <output name="out_dist" md5="bb2fefcda217604cd0e985f676168379"/> 95 <output name="out_dist" md5="bb2fefcda217604cd0e985f676168379"/>
94 </test> 96 </test>
95 <test> 97 <test>
96 <param name="fasta" value="amazon.unique.fasta"/> 98 <param name="fasta" value="amazon.unique.fasta"/>
102 <param name="match" value="2"/> 104 <param name="match" value="2"/>
103 <param name="mismatch" value="-1"/> 105 <param name="mismatch" value="-1"/>
104 <param name="gapopen" value="-2"/> 106 <param name="gapopen" value="-2"/>
105 <param name="gapextend" value="-1"/> 107 <param name="gapextend" value="-1"/>
106 <param name="output" value="lt"/> 108 <param name="output" value="lt"/>
109 <param name="savelog" value="true"/>
107 <expand macro="logfile-test"/> 110 <expand macro="logfile-test"/>
108 <output name="out_dist" md5="945c494bee1700c7f9a4ce5d87355190"/> 111 <output name="out_dist" md5="945c494bee1700c7f9a4ce5d87355190"/>
109 </test> 112 </test>
110 </tests> 113 </tests>
111 <help><![CDATA[ 114 <help><![CDATA[