Mercurial > repos > iuc > mothur_make_sra

comparison make.sra.xml @ 5:4aa5986d514f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:20:29 -0400
parents 215b28afd9dd
children 96eb54a3f485
comparison
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4:6972e6c52ea0 5:4aa5986d514f
160 <option value="GENOTYPE">GENOTYPE</option> 160 <option value="GENOTYPE">GENOTYPE</option>
161 <option value="OTHER">OTHER</option> 161 <option value="OTHER">OTHER</option>
162 </param> 162 </param>
163 <param name="trim" type="boolean" checked="true" truevalue="True" falsevalue="False" label="Trim sequences and quality scores?" help="will trim to the clipQualLeft and clipQualRight values in sff file"/> 163 <param name="trim" type="boolean" checked="true" truevalue="True" falsevalue="False" label="Trim sequences and quality scores?" help="will trim to the clipQualLeft and clipQualRight values in sff file"/>
164 <param name="includescrap" type="boolean" checked="true" truevalue="True" falsevalue="False" label="Include scrapped sequences in your submission?"/> 164 <param name="includescrap" type="boolean" checked="true" truevalue="True" falsevalue="False" label="Include scrapped sequences in your submission?"/>
165 <expand macro="param-savelog"/>
165 </inputs> 166 </inputs>
166 <outputs> 167 <outputs>
167 <expand macro="logfile-output"/> 168 <expand macro="logfile-output"/>
168 <data name="fasta_out" format="fasta" from_work_dir="sff*.fasta" label="${tool.name} on ${on_string}: fasta"/> 169 <data name="fasta_out" format="fasta" from_work_dir="sff*.fasta" label="${tool.name} on ${on_string}: fasta"/>
169 <data name="qual_out" format="qual" from_work_dir="sff*.qual" label="${tool.name} on ${on_string}: qual"/> 170 <data name="qual_out" format="qual" from_work_dir="sff*.qual" label="${tool.name} on ${on_string}: qual"/>
190 <has_text text="Submission"/> 191 <has_text text="Submission"/>
191 <has_text text="Attribute"/> 192 <has_text text="Attribute"/>
192 <has_text text="BioProject"/> 193 <has_text text="BioProject"/>
193 </assert_contents> 194 </assert_contents>
194 </output> 195 </output>
196 <param name="savelog" value="true"/>
195 <expand macro="logfile-test"/> 197 <expand macro="logfile-test"/>
196 </test> 198 </test>
197 </tests> 199 </tests>
198 <help><![CDATA[ 200 <help><![CDATA[
199 201