Mercurial > repos > iuc > mothur_make_lookup

comparison make.lookup.xml @ 5:d8bc8984cc49 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:01:09 -0400
parents 5aab3adcb3a3
children 52441faae412
comparison
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4:5aab3adcb3a3 5:d8bc8984cc49
51 <option value="I">I</option> 51 <option value="I">I</option>
52 </param> 52 </param>
53 <param name="barcode" type="text" value="AACCGTGTC" label="barcode - provide the barcode sequence"/> 53 <param name="barcode" type="text" value="AACCGTGTC" label="barcode - provide the barcode sequence"/>
54 <param name="key" type="text" value="TCAG" label="key - provide the key sequence"/> 54 <param name="key" type="text" value="TCAG" label="key - provide the key sequence"/>
55 <param name="threshold" type="integer" value="10000" min="0" label="threshold - " help=""/> 55 <param name="threshold" type="integer" value="10000" min="0" label="threshold - " help=""/>
56 <expand macro="param-savelog"/>
56 </inputs> 57 </inputs>
57 <outputs> 58 <outputs>
58 <expand macro="logfile-output"/> 59 <expand macro="logfile-output"/>
59 <data name="lookup_out" format="txt" from_work_dir="flow*.lookup" label="${tool.name} on ${on_string}: lookup"/> 60 <data name="lookup_out" format="txt" from_work_dir="flow*.lookup" label="${tool.name} on ${on_string}: lookup"/>
60 </outputs> 61 </outputs>
67 <output name="lookup_out" ftype="txt"> 68 <output name="lookup_out" ftype="txt">
68 <assert_contents> 69 <assert_contents>
69 <has_line_matching expression="^(-?[(\d\.|nan)]+\t?)+$"/> 70 <has_line_matching expression="^(-?[(\d\.|nan)]+\t?)+$"/>
70 </assert_contents> 71 </assert_contents>
71 </output> 72 </output>
73 <param name="savelog" value="true"/>
72 <expand macro="logfile-test"/> 74 <expand macro="logfile-test"/>
73 </test> 75 </test>
74 <test><!-- test sanitizers --> 76 <test><!-- test sanitizers -->
75 <param name="source" value="hist"/> 77 <param name="source" value="hist"/>
76 <param name="template" value="HMP_MOCK.v35.align" ftype="mothur.align"/> 78 <param name="template" value="HMP_MOCK.v35.align" ftype="mothur.align"/>
81 <output name="lookup_out" ftype="txt"> 83 <output name="lookup_out" ftype="txt">
82 <assert_contents> 84 <assert_contents>
83 <has_line_matching expression="^(-?[(\d\.|nan)]+\t?)+$"/> 85 <has_line_matching expression="^(-?[(\d\.|nan)]+\t?)+$"/>
84 </assert_contents> 86 </assert_contents>
85 </output> 87 </output>
88 <param name="savelog" value="true"/>
86 <expand macro="logfile-test"/> 89 <expand macro="logfile-test"/>
87 </test> 90 </test>
88 </tests> 91 </tests>
89 <help><![CDATA[ 92 <help><![CDATA[
90 93