Mercurial > repos > iuc > mothur_make_group

comparison make.group.xml @ 4:e1e0c8bb9aa8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:51:51 -0400
parents 5b28532dfc0a
children 06ddf1f9ffd4
comparison
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3:d9c06064675b 4:e1e0c8bb9aa8
50 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/> 50 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/>
51 <param name="group" type="text" label="group - Group name"/> 51 <param name="group" type="text" label="group - Group name"/>
52 </repeat> 52 </repeat>
53 </when> 53 </when>
54 </conditional> 54 </conditional>
55 <expand macro="param-savelog"/>
55 </inputs> 56 </inputs>
56 <outputs> 57 <outputs>
57 <expand macro="logfile-output"/> 58 <expand macro="logfile-output"/>
58 <data name="output" format="mothur.groups" from_work_dir="*groups" label="${tool.name} on ${on_string}: group"/> 59 <data name="output" format="mothur.groups" from_work_dir="*groups" label="${tool.name} on ${on_string}: group"/>
59 </outputs> 60 </outputs>
67 <repeat name="inputs"> 68 <repeat name="inputs">
68 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/> 69 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/>
69 <param name="group" value="testgroup2"/> 70 <param name="group" value="testgroup2"/>
70 </repeat> 71 </repeat>
71 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> 72 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/>
73 <param name="savelog" value="true"/>
72 <expand macro="logfile-test"/> 74 <expand macro="logfile-test"/>
73 </test> 75 </test>
74 <test> <!-- test auto-creation from collection --> 76 <test> <!-- test auto-creation from collection -->
75 <param name="how" value="collection"/> 77 <param name="how" value="collection"/>
76 <param name="fasta_collection"> 78 <param name="fasta_collection">
78 <element name="testgroup" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> 80 <element name="testgroup" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" />
79 <element name="testgroup2" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> 81 <element name="testgroup2" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" />
80 </collection> 82 </collection>
81 </param> 83 </param>
82 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> 84 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/>
83 <expand macro="logfile-test"/> 85 <param name="savelog" value="true"/>
86 <expand macro="logfile-test"/>
84 </test> 87 </test>
85 </tests> 88 </tests>
86 <help><![CDATA[ 89 <help><![CDATA[
87 90
88 @MOTHUR_OVERVIEW@ 91 @MOTHUR_OVERVIEW@