Mercurial > repos > iuc > mothur_make_contigs

diff make.contigs.xml @ 4:b1b4240133f5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:36:31 -0400
parents 0f563b96b60d
children 80fcd4bf633a
line wrap: on
line diff
--- a/make.contigs.xml	Wed Feb 14 09:54:16 2018 -0500
+++ b/make.contigs.xml	Tue Mar 20 13:36:31 2018 -0400
@@ -107,6 +107,7 @@
         <param name="rename" type="boolean" checked="true" truevalue="True" falsevalue="False" label="Renames sequences"
             help="reduce file sizes and greatly reduce the size of the column formatted distance matrix downstream.
             Uses the rename.seqs command to rename which creates a map file so you can revert to original names at any time"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -130,6 +131,7 @@
             <output name="fasta" file="Mock_S280_L001_R1_001_small.trim.contigs.fasta" ftype="fasta"/>
             <output name="qual" file="Mock_S280_L001_R1_001_small.trim.contigs.qual" ftype="qual"/>
             <output name="report" file="Mock_S280_L001_R1_001_small.contigs.report" ftype="txt"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <!-- Test with a simple paired collection as input -->
@@ -146,6 +148,7 @@
             <output name="fasta" file="Mock_S280_L001_R1_001_small.trim.contigs.fasta" ftype="fasta"/>
             <output name="qual" file="Mock_S280_L001_R1_001_small.trim.contigs.qual" ftype="qual"/>
             <output name="report" file="Mock_S280_L001_R1_001_small.contigs.report" ftype="txt"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <!-- Test with a simple paired collection as input + extra parameters specified -->
@@ -167,6 +170,7 @@
             <output name="fasta" md5="48e32c65bd9f064c5c0b4ea7695cabe9" ftype="fasta"/>
             <output name="qual" md5="1e7778cee0d86bfa2759a07bb4356165" ftype="qual"/>
             <output name="report" md5="5274725ef45890fd6da4650d5d536173" ftype="txt"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <!-- Test with a list:paired collection as input -->
@@ -194,6 +198,7 @@
             <output name="qual" md5="7094d1ac82a40e9f89cc6cdf5e214da7" ftype="qual"/>
             <output name="report" md5="96a07f664105e4ddcb645c7cd9f5d692" ftype="txt"/>
             <output name="group" md5="ef83b393be4103f0b61a021234905210" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>