Mercurial > repos > iuc > mothur_indicator

comparison indicator.xml @ 6:c1250ca75b93 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:54:20 -0400
parents 768bdcfeab90
children df705078eb4e
comparison
equal deleted inserted replaced
5:348d0a8948fa 6:c1250ca75b93
68 <filter type="data_meta" ref="otu" key="groups"/> 68 <filter type="data_meta" ref="otu" key="groups"/>
69 </options> 69 </options>
70 </param> 70 </param>
71 </when> 71 </when>
72 </conditional> 72 </conditional>
73 <expand macro="param-savelog"/>
73 </inputs> 74 </inputs>
74 <outputs> 75 <outputs>
75 <expand macro="logfile-output"/> 76 <expand macro="logfile-output"/>
76 <data name="tree_out" format="mothur.tre" from_work_dir="withdesign.tree*.tre" label="${tool.name} on ${on_string}: indicator.tre"> 77 <data name="tree_out" format="mothur.tre" from_work_dir="withdesign.tree*.tre" label="${tool.name} on ${on_string}: indicator.tre">
77 <filter>tree</filter> 78 <filter>tree</filter>
90 <has_line_matching expression="^OTU\tIndicator_Groups\tIndicator_Value\tpValue$"/> 91 <has_line_matching expression="^OTU\tIndicator_Groups\tIndicator_Value\tpValue$"/>
91 <has_text text="forest"/> 92 <has_text text="forest"/>
92 <has_text text="pasture"/> 93 <has_text text="pasture"/>
93 </assert_contents> 94 </assert_contents>
94 </output> 95 </output>
96 <param name="savelog" value="true"/>
95 <expand macro="logfile-test"/> 97 <expand macro="logfile-test"/>
96 </test> 98 </test>
97 <test><!-- test with design input and subset of groups--> 99 <test><!-- test with design input and subset of groups-->
98 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 100 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
99 <param name="havedesign" value="yes"/> 101 <param name="havedesign" value="yes"/>
104 <has_line_matching expression="^OTU\tIndicator_Groups\tIndicator_Value\tpValue$"/> 106 <has_line_matching expression="^OTU\tIndicator_Groups\tIndicator_Value\tpValue$"/>
105 <has_text text="forest"/> 107 <has_text text="forest"/>
106 <not_has_text text="pasture"/> 108 <not_has_text text="pasture"/>
107 </assert_contents> 109 </assert_contents>
108 </output> 110 </output>
111 <param name="savelog" value="true"/>
109 <expand macro="logfile-test"/> 112 <expand macro="logfile-test"/>
110 </test> 113 </test>
111 <test><!-- test with tree input --> 114 <test><!-- test with tree input -->
112 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 115 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
113 <param name="havedesign" value="no"/> 116 <param name="havedesign" value="no"/>
118 <has_text text="TreeNode"/> 121 <has_text text="TreeNode"/>
119 <has_text text="forest-pasture"/> 122 <has_text text="forest-pasture"/>
120 </assert_contents> 123 </assert_contents>
121 </output> 124 </output>
122 <output name="tree_out" md5="a22f90898611e1f4c5d84cfe18dc6ebe"/> 125 <output name="tree_out" md5="a22f90898611e1f4c5d84cfe18dc6ebe"/>
126 <param name="savelog" value="true"/>
123 <expand macro="logfile-test"/> 127 <expand macro="logfile-test"/>
124 </test> 128 </test>
125 <test><!-- test with tree input and subset of groups --> 129 <test><!-- test with tree input and subset of groups -->
126 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 130 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
127 <param name="havedesign" value="no"/> 131 <param name="havedesign" value="no"/>
132 <has_text text="TreeNode"/> 136 <has_text text="TreeNode"/>
133 <not_has_text text="forest-pasture"/> 137 <not_has_text text="forest-pasture"/>
134 </assert_contents> 138 </assert_contents>
135 </output> 139 </output>
136 <output name="tree_out" md5="756bfd16311e141a099cfe96db458d83"/> 140 <output name="tree_out" md5="756bfd16311e141a099cfe96db458d83"/>
141 <param name="savelog" value="true"/>
137 <expand macro="logfile-test"/> 142 <expand macro="logfile-test"/>
138 </test> 143 </test>
139 </tests> 144 </tests>
140 <help><![CDATA[ 145 <help><![CDATA[
141 146