Mercurial > repos > iuc > mothur_get_sharedseqs

diff get.sharedseqs.xml @ 5:779fb6464cd5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:15:21 -0400
parents 30f2529d9cc6
children
line wrap: on
line diff
--- a/get.sharedseqs.xml	Wed Feb 14 11:42:32 2018 -0500
+++ b/get.sharedseqs.xml	Tue Mar 20 14:15:21 2018 -0400
@@ -126,6 +126,7 @@
             <option value="" selected="true">default: (name group bin_number)</option>
             <option value="accnos">accnos (name)</option>
         </param>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -150,6 +151,7 @@
             <output_collection name="sharedseqs" count="35">
                 <element name="0.41.unique.forest_pasture" md5="e07fe8acfa12d6f61a9efee88d91be54" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with list and group file -->
@@ -159,6 +161,7 @@
             <output_collection name="sharedseqs" count="35">
                 <element name="0.41.unique.forest_pasture" md5="ceb32c3dc2c99055efdaa6ef6aaed7f0" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with shared seqs and subset of labels -->
@@ -170,6 +173,7 @@
             <output_collection name="sharedseqs" count="3">
                 <element name="0.41.forest_pasture" md5="e07fe8acfa12d6f61a9efee88d91be54" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with unique seqs and subset of groups -->
@@ -180,6 +184,7 @@
             <output_collection name="sharedseqs" count="34">
                 <element name="0.41.unique.pasture" md5="f4735f56d96d13cd603ca0b11c4bc231" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with accnos output -->
@@ -189,6 +194,7 @@
             <output_collection name="sharedaccnos" count="35">
                 <element name="0.41.unique.forest_pasture" md5="0e0dcf8a91c03e1cc6adbf2593addf20" ftype="mothur.accnos"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with fasta input and output -->
@@ -202,6 +208,7 @@
             <output_collection name="sharedfastas" count="35">
                 <element name="0.41.unique.forest_pasture" md5="fd4265d7c139d2d3acf8e19e6337ee28" ftype="fasta"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>