Mercurial > repos > iuc > mothur_get_sharedseqs

comparison README @ 1:e4e0bfb92a94 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ea40e3d84e7850eb4226d6c85f709dcad18d4ba9
author iuc
date Thu, 18 May 2017 18:49:35 -0400
parents d20133cb8909
children
comparison
equal deleted inserted replaced
0:d20133cb8909 1:e4e0bfb92a94
2 2
3 The Mothur Tool Suite repository: 3 The Mothur Tool Suite repository:
4 - Provides Mothur wrappers for the Mothur tools 4 - Provides Mothur wrappers for the Mothur tools
5 - Downloads and builds Mothur and all its dependencies on the Linux or Mac operating system 5 - Downloads and builds Mothur and all its dependencies on the Linux or Mac operating system
6 6
7 Requirements: 7 Installing Tools via the API:
8 - Build utilities (make, GCC, gfortran, etc) 8 This is a rather large tool suite, if you are having problems installing via the toolshed, try using the API instead
9 - Install ephemeris: pip install ephemeris -U
10 - Use ephemeris to install tools: shed_install -a <your admin API key> -t tools.yaml
11 - (You can find a tools.yaml you can use in this repo as well)
9 12
10 Installing reference data from silva and greengenes: 13 Installing reference data from silva and greengenes:
11 - There is a Galaxy datamanager for available for Mothur 14 - There is a Galaxy datamanager for available for Mothur
12 15
13 RDP reference file (modified for mothur): 16 RDP reference file (modified for mothur):