diff get.seqs.xml @ 5:130711597b24 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:32:52 -0400
parents ef6de2793ab6
children
line wrap: on
line diff
--- a/get.seqs.xml	Wed Feb 14 11:21:58 2018 -0500
+++ b/get.seqs.xml	Tue Mar 20 13:32:52 2018 -0400
@@ -68,6 +68,7 @@
         <param name="list_in" type="data" format="mothur.list" optional="true" label="list - OTU List"/>
         <param name="taxonomy_in" type="data" format="mothur.seq.taxonomy" optional="true" label="taxonomy - Taxonomy"/>
         <param name="dups" type="boolean" truevalue="dups" falsevalue="false" checked="true" label="dups - Apply to duplicates"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -105,12 +106,14 @@
             <param name="fasta_in" value="Mock_S280_L001_R1_001_small.trim.contigs.fasta"/>
             <param name="dups" value=""/>
             <output name="fasta_out" md5="f9335b6b70dc639e420d33809e51431d"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
             <param name="accnos" value="Mock_S280_L001_R1_001_small.trim.contigs.bad.accnos"/>
             <param name="fastq_in" value="Mock_S280_L001_R1_001_small.fastq"/>
             <output name="fastq_out" md5="81d026f969e15b8c8701f8dc5f3a6904"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
@@ -121,12 +124,14 @@
             <param name="dups" value="false"/>
             <output name="fasta_out" md5="f9335b6b70dc639e420d33809e51431d"/>
             <output name="fastq_out" md5="81d026f969e15b8c8701f8dc5f3a6904"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
             <param name="accnos" value="amazon.bad.accnos"/>
             <param name="count_in" value="amazon.count_table"/>
             <output name="count_out" md5="6892dd99850ce9e9f8f15e77b28f57e2"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>