Mercurial > repos > iuc > mothur_get_rabund

diff get.rabund.xml @ 5:b5025af79eac draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:15:44 -0400
parents 4b702fcdcd36
children
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--- a/get.rabund.xml	Wed Feb 14 11:59:05 2018 -0500
+++ b/get.rabund.xml	Tue Mar 20 14:15:44 2018 -0400
@@ -39,6 +39,7 @@
         <param name="sorted" type="boolean" checked="false" truevalue="true" falsevalue="false" label="sorted - sort by abundance"
             help="By default the data in the rabund file the same order as the OTUs in input, select to sort by abundance."/>
         <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -49,11 +50,13 @@
             <param name="otu" value="amazon.an.sabund" ftype="mothur.sabund"/>
             <param name="label" value="0.03,0.05"/>
             <output name="rabund" file="amazon.an.rabund2" ftype="mothur.rabund"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test otu list input -->
             <param name="otu" value="amazon.an.list" ftype="mothur.list"/>
             <output name="rabund" file="amazon.an.rabund" ftype="mothur.rabund"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>