Mercurial > repos > iuc > mothur_get_otus

comparison get.otus.xml @ 5:1a1ab2e282fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:57:39 -0400
parents 73f7faafd5ee
children
comparison
equal deleted inserted replaced
4:2e49ac7b5845 5:1a1ab2e282fa
83 <filter type="data_meta" ref="shared" key="labels"/> 83 <filter type="data_meta" ref="shared" key="labels"/>
84 </options> 84 </options>
85 </param> 85 </param>
86 </when> 86 </when>
87 </conditional> 87 </conditional>
88 <expand macro="param-savelog"/>
88 </inputs> 89 </inputs>
89 <outputs> 90 <outputs>
90 <expand macro="logfile-output"/> 91 <expand macro="logfile-output"/>
91 <data name="list_out" format="mothur.list" from_work_dir="list*.pick.*" label="${tool.name} on ${on_string}: pick.list"> 92 <data name="list_out" format="mothur.list" from_work_dir="list*.pick.*" label="${tool.name} on ${on_string}: pick.list">
92 <filter> $list </filter> 93 <filter> $list </filter>
116 <has_text text="Otu17"/> 117 <has_text text="Otu17"/>
117 <has_text text="Otu42"/> 118 <has_text text="Otu42"/>
118 <not_has_text text="Otu43"/> 119 <not_has_text text="Otu43"/>
119 </assert_contents> 120 </assert_contents>
120 </output> 121 </output>
122 <param name="savelog" value="true"/>
121 <expand macro="logfile-test"/> 123 <expand macro="logfile-test"/>
122 </test> 124 </test>
123 <test><!-- test with shared and otu.corr file and label select --> 125 <test><!-- test with shared and otu.corr file and label select -->
124 <param name="shared" value="amazon.an.shared" ftype="mothur.shared"/> 126 <param name="shared" value="amazon.an.shared" ftype="mothur.shared"/>
125 <param name="accnos" value="amazon.otus.accnos" ftype="mothur.accnos"/> 127 <param name="accnos" value="amazon.otus.accnos" ftype="mothur.accnos"/>
134 <has_text text="Otu17"/> 136 <has_text text="Otu17"/>
135 <has_text text="Otu42"/> 137 <has_text text="Otu42"/>
136 <not_has_text text="Otu43"/> 138 <not_has_text text="Otu43"/>
137 </assert_contents> 139 </assert_contents>
138 </output> 140 </output>
141 <param name="savelog" value="true"/>
139 <expand macro="logfile-test"/> 142 <expand macro="logfile-test"/>
140 </test> 143 </test>
141 </tests> 144 </tests>
142 <help><![CDATA[ 145 <help><![CDATA[
143 146