view test-data/mothur.1518613968.logfile @ 3:899ef1660676 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 4648c7574a78601e03ae6a318cbcd5b492a8a9f4
author iuc
date Wed, 14 Feb 2018 09:44:01 -0500
parents
children
line wrap: on
line source

Linux version

Using ReadLine

Running 64Bit Version

mothur v.1.39.5
Last updated: 3/20/2017

by
Patrick D. Schloss

Department of Microbiology & Immunology
University of Michigan
http://www.mothur.org

When using, please cite:
Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.

Distributed under the GNU General Public License

Type 'help()' for information on the commands that are available

For questions and analysis support, please visit our forum at https://www.mothur.org/forum

Type 'quit()' to exit program
Interactive Mode


mothur > classify.svm(shared=final.tx.1.subsample.1.pick.shared,design=test.design,transform=zeroone)
1
transforming data to lie within range [0,1]
SVM-RFE round 1:
44 unranked features












































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































































failed to train SVM on labels A and B
[ERROR]: std::exceptionRAM used: 0.00565338Gigabytes . Total Ram: 62.8475Gigabytes.

 has occurred in the ClassifySvmSharedCommand class function processSharedAndDesignData. Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry.