Mercurial > repos > iuc > mothur_get_oturep
view test-data/mothur.1518613872.logfile @ 3:899ef1660676 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 4648c7574a78601e03ae6a318cbcd5b492a8a9f4
| author | iuc |
|---|---|
| date | Wed, 14 Feb 2018 09:44:01 -0500 |
| parents | |
| children |
line wrap: on
line source
Linux version Using ReadLine Running 64Bit Version mothur v.1.39.5 Last updated: 3/20/2017 by Patrick D. Schloss Department of Microbiology & Immunology University of Michigan http://www.mothur.org When using, please cite: Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. Distributed under the GNU General Public License Type 'help()' for information on the commands that are available For questions and analysis support, please visit our forum at https://www.mothur.org/forum Type 'quit()' to exit program Interactive Mode mothur > classify.svm(shared=final.tx.1.subsample.1.pick.shared,design=test.design, stdthreshold=0.1) 1 feature index 43 feature 43 has std 1.13039 feature index 42 feature 42 has std 0.333333 feature index 41 feature 41 has std 1.13039 feature index 40 feature 40 has std 0.666667 feature index 39 feature 39 has std 0.707107 feature index 38 feature 38 has std 0.726483 feature index 37 feature 37 has std 1.41421 feature index 36 feature 36 has std 0.440959 feature index 35 feature 35 has std 1.05409 feature index 34 feature 34 has std 1.11803 feature index 33 feature 33 has std 2.59808 feature index 32 feature 32 has std 1.5899 feature index 31 feature 31 has std 0.440959 feature index 30 feature 30 has std 1.11803 feature index 29 feature 29 has std 1.30171 feature index 28 feature 28 has std 0.666667 feature index 27 feature 27 has std 0.333333 feature index 26 feature 26 has std 0.833333 feature index 25 feature 25 has std 0.726483 feature index 24 feature 24 has std 0.666667 feature index 23 feature 23 has std 0.333333 feature index 22 feature 22 has std 1.50923 feature index 21 feature 21 has std 1.53659 feature index 20 feature 20 has std 1.16667 feature index 19 feature 19 has std 1.41421 feature index 18 feature 18 has std 14.8577 feature index 17 feature 17 has std 1.66667 feature index 16 feature 16 has std 3.32081 feature index 15 feature 15 has std 7.93375 feature index 14 feature 14 has std 18.2422 feature index 13 feature 13 has std 42.354 feature index 12 feature 12 has std 10.7471 feature index 11 feature 11 has std 261.303 feature index 10 feature 10 has std 36.524 feature index 9 feature 9 has std 78.4301 feature index 8 feature 8 has std 58.3919 feature index 7 feature 7 has std 33.6022 feature index 6 feature 6 has std 107.001 feature index 5 feature 5 has std 15.6 feature index 4 feature 4 has std 184.297 feature index 3 feature 3 has std 278.832 feature index 2 feature 2 has std 182.178 feature index 1 feature 1 has std 111.537 feature index 0 feature 0 has std 398.811 transforming data to have zero mean and unit variance SVM-RFE round 1: 44 unranked features failed to train SVM on labels A and B [ERROR]: std::exceptionRAM used: 0.00563812Gigabytes . Total Ram: 62.8475Gigabytes. has occurred in the ClassifySvmSharedCommand class function processSharedAndDesignData. Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry.