Mercurial > repos > iuc > mothur_get_oturep

comparison macros.xml @ 0:d568050a95be draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 180a403421967d36f995941b1a4561349d75cfc5
author iuc
date Fri, 24 Jun 2016 16:33:26 -0400
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children 17b63c3cc04d
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-1:000000000000 0:d568050a95be
1 <macros>
2 <xml name="requirements">
3 <requirements>
4 <requirement type="package" version="1.36.1">mothur</requirement>
5 </requirements>
6 </xml>
7 <xml name="version_command">
8 <version_command>mothur "#help()" | sed '7q;d' | cut -d" " -f2 </version_command>
9 </xml>
10 <token name="@WRAPPER_VERSION@">1.36.1</token>
11 <token name="@MOTHUR_OVERVIEW@">
12 <![CDATA[
13
14 **Mothur Overview**
15
16 Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team
17 in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.
18
19 .. _Mothur-Wiki: http://www.mothur.org/wiki/Main_Page
20
21 ]]>
22 </token>
23 <xml name="labeloptions">
24 <options>
25 <filter type="data_meta" ref="otu" key="labels"/>
26 </options>
27 </xml>
28 <xml name="logfile-output">
29 <data name="logfile" format="txt" from_work_dir="mothur.*.logfile" label="${tool.name} on ${on_string}: logfile"/>
30 </xml>
31 <xml name="logfile-test">
32 <output name="logfile" ftype="txt">
33 <assert_contents>
34 <has_text text="mothur"/>
35 <has_text text="@WRAPPER_VERSION@"/>
36 </assert_contents>
37 </output>
38 </xml>
39 <xml name="citations">
40 <citations>
41 <citation type="doi">10.1128/AEM.01541-09</citation>
42 <yield/>
43 </citations>
44 </xml>
45 </macros>