Mercurial > repos > iuc > mothur_get_oturep

comparison test-data/mothur.1518613936.logfile @ 3:899ef1660676 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 4648c7574a78601e03ae6a318cbcd5b492a8a9f4
author iuc
date Wed, 14 Feb 2018 09:44:01 -0500
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2:d3e59b8d2921 3:899ef1660676
1 Linux version
2
3 Using ReadLine
4
5 Running 64Bit Version
6
7 mothur v.1.39.5
8 Last updated: 3/20/2017
9
10 by
11 Patrick D. Schloss
12
13 Department of Microbiology & Immunology
14 University of Michigan
15 http://www.mothur.org
16
17 When using, please cite:
18 Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
19
20 Distributed under the GNU General Public License
21
22 Type 'help()' for information on the commands that are available
23
24 For questions and analysis support, please visit our forum at https://www.mothur.org/forum
25
26 Type 'quit()' to exit program
27 Interactive Mode
28
29
30 mothur > classify.svm(shared=final.tx.1.subsample.1.pick.shared,design=test.design, kernel=polynomial)
31 removing kernel linear
32 removing kernel rbf
33 removing kernel sigmoid
34 1
35 transforming data to have zero mean and unit variance
36 SVM-RFE round 1:
37 44 unranked features
38 failed to train SVM on labels A and B
39 [ERROR]: std::exceptionRAM used: 0.00564575Gigabytes . Total Ram: 62.8475Gigabytes.
40
41 has occurred in the ClassifySvmSharedCommand class function processSharedAndDesignData. Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry.