Mercurial > repos > iuc > mothur_get_mimarkspackage

comparison get.mimarkspackage.xml @ 4:e7708e0ba8a0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:18:21 -0400
parents 437a9a9a9c00
children 36a410674667
comparison
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3:437a9a9a9c00 4:e7708e0ba8a0
53 <option value="soil">soil</option> 53 <option value="soil">soil</option>
54 <option value="wastewater">wastewater</option> 54 <option value="wastewater">wastewater</option>
55 <option value="waterc">waterc</option> 55 <option value="waterc">waterc</option>
56 </param> 56 </param>
57 <param name="requiredonly" type="boolean" truevalue="true" falsevalue="false" checked="false" label="requiredonly - used to indicate you only want the required mimarks fields printed. Default=false"/> 57 <param name="requiredonly" type="boolean" truevalue="true" falsevalue="false" checked="false" label="requiredonly - used to indicate you only want the required mimarks fields printed. Default=false"/>
58 <expand macro="param-savelog"/>
58 </inputs> 59 </inputs>
59 <outputs> 60 <outputs>
60 <expand macro="logfile-output"/> 61 <expand macro="logfile-output"/>
61 <data name="package_out" format="tabular" from_work_dir="input.infile*.tsv" label="${tool.name} on ${on_string}: mimarks package"/> 62 <data name="package_out" format="tabular" from_work_dir="input.infile*.tsv" label="${tool.name} on ${on_string}: mimarks package"/>
62 </outputs> 63 </outputs>
63 <tests> 64 <tests>
64 <test><!-- test with group file --> 65 <test><!-- test with group file -->
65 <param name="filetype" value="group"/> 66 <param name="filetype" value="group"/>
66 <param name="infile" value="amazon.groups" ftype="mothur.groups"/> 67 <param name="infile" value="amazon.groups" ftype="mothur.groups"/>
67 <output name="package_out" md5="8e97dbe732b257494b796d23a3688d5a" ftype="tabular"/> 68 <output name="package_out" md5="8e97dbe732b257494b796d23a3688d5a" ftype="tabular"/>
69 <param name="savelog" value="true"/>
68 <expand macro="logfile-test"/> 70 <expand macro="logfile-test"/>
69 </test> 71 </test>
70 <test><!-- test with oligos --> 72 <test><!-- test with oligos -->
71 <param name="filetype" value="oligos"/> 73 <param name="filetype" value="oligos"/>
72 <param name="infile" value="GQY1XT001.oligos" ftype="mothur.oligos"/> 74 <param name="infile" value="GQY1XT001.oligos" ftype="mothur.oligos"/>
73 <param name="package" value="human_associated"/> 75 <param name="package" value="human_associated"/>
74 <param name="requiredonly" value="true"/> 76 <param name="requiredonly" value="true"/>
75 <output name="package_out" md5="975cd41eb9a97725795c582dc7e903a3" ftype="tabular"/> 77 <output name="package_out" md5="975cd41eb9a97725795c582dc7e903a3" ftype="tabular"/>
78 <param name="savelog" value="true"/>
76 <expand macro="logfile-test"/> 79 <expand macro="logfile-test"/>
77 </test> 80 </test>
78 </tests> 81 </tests>
79 <help><![CDATA[ 82 <help><![CDATA[
80 83