Mercurial > repos > iuc > mothur_get_groups

diff get.groups.xml @ 4:3d777453d29d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:01:41 -0400
parents 378f8103cf1b
children
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--- a/get.groups.xml	Wed Feb 14 10:12:03 2018 -0500
+++ b/get.groups.xml	Tue Mar 20 14:01:41 2018 -0400
@@ -94,6 +94,7 @@
             help="must be a phylip-formatted distance matrix"/>
         <param name="column_in" type="data" format="mothur.pair.dist" optional="true" label="column - Distance Matrix you would like to select distances from"
             help="must be a column-formatted distance matrix"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -136,6 +137,7 @@
             <param name="source" value="groups"/>
             <param name="groups" value="forest,pasture"/>
             <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with accnos file -->
@@ -143,6 +145,7 @@
             <param name="source" value="accnos"/>
             <param name="accnos" value="amazon.groupaccnos" ftype="mothur.accnos"/>
             <output name="group_out" md5="fb60628ae445e7b06f9833f632b2cd0c" ftype="mothur.groups"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with accnos file and most extra files-->
@@ -162,6 +165,7 @@
             <output_collection name="sharedfiles" count="36">
                 <element name="0.38" md5="3c78742e0a480ca3353f9b591fc9bf36" ftype="mothur.shared"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with distance matrix -->
@@ -182,6 +186,7 @@
                     <has_text text="U68589"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>