Mercurial > repos > iuc > mothur_get_group

comparison get.group.xml @ 1:583954d9f36e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author iuc
date Fri, 19 May 2017 05:25:39 -0400
parents 64172c653a64
children 69755983dd89
comparison
equal deleted inserted replaced
0:64172c653a64 1:583954d9f36e
2 <description>group names from shared or from list and group</description> 2 <description>group names from shared or from list and group</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio"/>
7 <expand macro="version_command"/> 8 <expand macro="version_command"/>
8 <command detect_errors="aggressive"><![CDATA[ 9 <command><![CDATA[
10 @SHELL_OPTIONS@
11
9 ## create symlinks to input datasets 12 ## create symlinks to input datasets
10 ln -s "$otu" otu.dat && 13 ln -s "$otu" otu.dat &&
11 14
12 echo 'get.group( 15 echo 'get.group(
13 shared=otu.dat 16 shared=otu.dat
14 )' 17 )'
15 | sed 's/ //g' ## mothur trips over whitespace 18 | sed 's/ //g' ## mothur trips over whitespace
16 | mothur && 19 | mothur
20 | tee mothur.out.log &&
17 21
18 ## parse relevant output from logfile to file 22 ## parse relevant output from logfile to file
19 cat mothur.*.logfile 23 cat mothur.*.logfile
20 | head -n-6 24 | head -n-6
21 | sed '1,29d' 25 | sed '1,29d'
38 <help> 42 <help>
39 <![CDATA[ 43 <![CDATA[
40 44
41 @MOTHUR_OVERVIEW@ 45 @MOTHUR_OVERVIEW@
42 46
43 **Command Documenation** 47 **Command Documentation**
44 48
45 The get.group_ command generate principle components plot data. 49 The get.group_ command generate principle components plot data.
46 50
47 .. _get.group: http://www.mothur.org/wiki/Get.group 51 .. _get.group: https://www.mothur.org/wiki/Get.group
48 52
49 v.1.20.0: Updated to Mothur 1.33 53 v.1.20.0: Updated to Mothur 1.33
50 ]]> 54 ]]>
51 </help> 55 </help>
52 <expand macro="citations"/> 56 <expand macro="citations"/>