Mercurial > repos > iuc > mothur_get_coremicrobiome

comparison get.coremicrobiome.xml @ 4:a6e3c040eb53 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:45:20 -0400
parents 5e29cbb2fdef
children
comparison
equal deleted inserted replaced
3:5e29cbb2fdef 4:a6e3c040eb53
49 <param name="samples" type="integer" optional="true" value="" min="1" label="samples - minimum number of samples requied to list OTU names"/> 49 <param name="samples" type="integer" optional="true" value="" min="1" label="samples - minimum number of samples requied to list OTU names"/>
50 <param name="output" type="select" label="output - fraction or count"> 50 <param name="output" type="select" label="output - fraction or count">
51 <option value="fraction" selected="true">fraction</option> 51 <option value="fraction" selected="true">fraction</option>
52 <option value="count">count</option> 52 <option value="count">count</option>
53 </param> 53 </param>
54 <expand macro="param-savelog"/>
54 </inputs> 55 </inputs>
55 <outputs> 56 <outputs>
56 <expand macro="logfile-output"/> 57 <expand macro="logfile-output"/>
57 <collection name="core_microbiome" type="list" label="${tool.name} on ${on_string}: core.microbiome files"> 58 <collection name="core_microbiome" type="list" label="${tool.name} on ${on_string}: core.microbiome files">
58 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.core\.microbiome$" format="tabular"/> 59 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.core\.microbiome$" format="tabular"/>
66 <test><!-- test with default params --> 67 <test><!-- test with default params -->
67 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 68 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
68 <output_collection name="core_microbiome" count="36"> 69 <output_collection name="core_microbiome" count="36">
69 <element name="0.45" md5="bae9cb5f1d311fe0cfb7ecb72a177261" ftype="tabular"/> 70 <element name="0.45" md5="bae9cb5f1d311fe0cfb7ecb72a177261" ftype="tabular"/>
70 </output_collection> 71 </output_collection>
72 <param name="savelog" value="true"/>
71 <expand macro="logfile-test"/> 73 <expand macro="logfile-test"/>
72 </test> 74 </test>
73 <test><!-- test with list output and label and group select--> 75 <test><!-- test with list output and label and group select-->
74 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 76 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
75 <param name="abundance" value="30"/> 77 <param name="abundance" value="30"/>
79 <element name="0.05" md5="72bb437ab5f3a66965029a616fbaf317" ftype="tabular"/> 81 <element name="0.05" md5="72bb437ab5f3a66965029a616fbaf317" ftype="tabular"/>
80 </output_collection> 82 </output_collection>
81 <output_collection name="core_microbiome_list" count="3"> 83 <output_collection name="core_microbiome_list" count="3">
82 <element name="0.05" md5="83722b4c52b7faff7fe56ce026250001" ftype="tabular"/> 84 <element name="0.05" md5="83722b4c52b7faff7fe56ce026250001" ftype="tabular"/>
83 </output_collection> 85 </output_collection>
86 <param name="savelog" value="true"/>
84 <expand macro="logfile-test"/> 87 <expand macro="logfile-test"/>
85 </test> 88 </test>
86 </tests> 89 </tests>
87 <help><![CDATA[ 90 <help><![CDATA[
88 91