Mercurial > repos > iuc > mothur_filter_seqs

diff filter.seqs.xml @ 5:ff039df26c3f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:42:43 -0400
parents 3ced7f00e40b
children f93cee78b339
line wrap: on
line diff
--- a/filter.seqs.xml	Wed Feb 14 11:57:22 2018 -0500
+++ b/filter.seqs.xml	Tue Mar 20 13:42:43 2018 -0400
@@ -56,6 +56,7 @@
             help="Removes any column where the dominant base (i.e. A, T, G, C, or U) does not occur in at least a designated percentage of sequences"/>
         <param name="hard" type="data" format="mothur.filter" optional="True" label="hard - Hard Column Filter"
             help="A file should only contain one line consisting of 0's and 1's"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -78,12 +79,14 @@
             <output_collection name="filteredfastas" count="2">
                 <element name="HMP_MOCK.v35.align" md5="ef4c6c2d9a882f7a22e5fa3c814af7cc" ftype="fasta"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with single input and non-collection output -->
             <param name="fasta" value="HMP_MOCK.v35.align" ftype="mothur.align"/>
             <output name="out_filter" md5="3e6c2cfef46baf35d2a8b5cafe53e3a4"/>
             <output name="filteredfasta" md5="ef4c6c2d9a882f7a22e5fa3c814af7cc"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>