Mercurial > repos > iuc > mothur_dist_seqs

comparison dist.seqs.xml @ 5:3456fb5f8a3a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:14:55 -0400
parents 2211f97b6d1b
children 5349ab1a18c4
comparison
equal deleted inserted replaced
4:2211f97b6d1b 5:3456fb5f8a3a
44 <param name="output" type="select" label="output - Distance Matrix Output Format" help=""> 44 <param name="output" type="select" label="output - Distance Matrix Output Format" help="">
45 <option value="" selected="true">Default Column-Formatted Matrix</option> 45 <option value="" selected="true">Default Column-Formatted Matrix</option>
46 <option value="lt">Phylip formatted Lower Triangle Matrix</option> 46 <option value="lt">Phylip formatted Lower Triangle Matrix</option>
47 <option value="square">Phylip formatted Square Matrix</option> 47 <option value="square">Phylip formatted Square Matrix</option>
48 </param> 48 </param>
49 <expand macro="param-savelog"/>
49 </inputs> 50 </inputs>
50 <outputs> 51 <outputs>
51 <expand macro="logfile-output"/> 52 <expand macro="logfile-output"/>
52 <data name="out_dist" format="mothur.pair.dist" from_work_dir="fasta*.dist" label="${tool.name} on ${on_string}: dist"> 53 <data name="out_dist" format="mothur.pair.dist" from_work_dir="fasta*.dist" label="${tool.name} on ${on_string}: dist">
53 <change_format> 54 <change_format>
58 </outputs> 59 </outputs>
59 <tests> 60 <tests>
60 <test><!-- test with default params --> 61 <test><!-- test with default params -->
61 <param name="fasta" value="HMP_MOCK.v35.align" ftype="mothur.align"/> 62 <param name="fasta" value="HMP_MOCK.v35.align" ftype="mothur.align"/>
62 <output name="out_dist" md5="2c4817bb8657b4df2dcb1f2a019f505e" ftype="mothur.pair.dist"/> 63 <output name="out_dist" md5="2c4817bb8657b4df2dcb1f2a019f505e" ftype="mothur.pair.dist"/>
64 <param name="savelog" value="true"/>
63 <expand macro="logfile-test"/> 65 <expand macro="logfile-test"/>
64 </test> 66 </test>
65 <test><!-- test with all params custom --> 67 <test><!-- test with all params custom -->
66 <param name="fasta" value="HMP_MOCK.v35.align" ftype="mothur.align"/> 68 <param name="fasta" value="HMP_MOCK.v35.align" ftype="mothur.align"/>
67 <param name="calc" value="nogaps"/> 69 <param name="calc" value="nogaps"/>
68 <param name="countends" value="false"/> 70 <param name="countends" value="false"/>
69 <param name="cutoff" value="0.3"/> 71 <param name="cutoff" value="0.3"/>
70 <param name="output" value="lt"/> 72 <param name="output" value="lt"/>
71 <output name="out_dist" md5="8a5ccf1ad8f1c344cf4d3e2c97d4cdc6" ftype="mothur.lower.dist"/> 73 <output name="out_dist" md5="8a5ccf1ad8f1c344cf4d3e2c97d4cdc6" ftype="mothur.lower.dist"/>
74 <param name="savelog" value="true"/>
72 <expand macro="logfile-test"/> 75 <expand macro="logfile-test"/>
73 </test> 76 </test>
74 </tests> 77 </tests>
75 <help><![CDATA[ 78 <help><![CDATA[
76 79