Mercurial > repos > iuc > mothur_deunique_seqs

comparison deunique.seqs.xml @ 6:e301e47b31a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:00:25 -0400
parents 09c8815c455b
children
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5:09c8815c455b 6:e301e47b31a5
39 <param name="names" type="data" format="mothur.count_table" label="provide a count table" 39 <param name="names" type="data" format="mothur.count_table" label="provide a count table"
40 help="A counts table will generate a new faste file containing all the sequences. 40 help="A counts table will generate a new faste file containing all the sequences.
41 If the file contains group information, a group file will also be created."/> 41 If the file contains group information, a group file will also be created."/>
42 </when> 42 </when>
43 </conditional> 43 </conditional>
44 <expand macro="param-savelog"/>
44 </inputs> 45 </inputs>
45 <outputs> 46 <outputs>
46 <expand macro="logfile-output"/> 47 <expand macro="logfile-output"/>
47 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.redundant.fasta" label="${tool.name} on ${on_string}: fasta"/> 48 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.redundant.fasta" label="${tool.name} on ${on_string}: fasta"/>
48 <!-- groups file is created when a count file is used as input, but will be empty if the count file did not contain group information --> 49 <!-- groups file is created when a count file is used as input, but will be empty if the count file did not contain group information -->
54 <test><!-- test names file input --> 55 <test><!-- test names file input -->
55 <param name="fasta" value="amazon.unique.fasta"/> 56 <param name="fasta" value="amazon.unique.fasta"/>
56 <param name="intype" value="namesfile"/> 57 <param name="intype" value="namesfile"/>
57 <param name="names" value="amazon.unique.names"/> 58 <param name="names" value="amazon.unique.names"/>
58 <output name="out_fasta" md5="579698b8037ee939dd730e2cf0dd018d" ftype="fasta"/> 59 <output name="out_fasta" md5="579698b8037ee939dd730e2cf0dd018d" ftype="fasta"/>
60 <param name="savelog" value="true"/>
59 <expand macro="logfile-test"/> 61 <expand macro="logfile-test"/>
60 </test> 62 </test>
61 <test><!-- test count file input with group file output --> 63 <test><!-- test count file input with group file output -->
62 <param name="fasta" value="amazon.unique.fasta"/> 64 <param name="fasta" value="amazon.unique.fasta"/>
63 <param name="intype" value="countfile"/> 65 <param name="intype" value="countfile"/>
64 <param name="names" value="amazon_withgroups.count_table"/> 66 <param name="names" value="amazon_withgroups.count_table"/>
65 <output name="out_fasta" md5="177f5cf92a84ab3aef0a665e06178bbe" ftype="fasta"/> 67 <output name="out_fasta" md5="177f5cf92a84ab3aef0a665e06178bbe" ftype="fasta"/>
66 <output name="groups_file" file="amazon_withgroups.redundant.groups" ftype="mothur.groups"/> 68 <output name="groups_file" file="amazon_withgroups.redundant.groups" ftype="mothur.groups"/>
69 <param name="savelog" value="true"/>
67 <expand macro="logfile-test"/> 70 <expand macro="logfile-test"/>
68 </test> 71 </test>
69 <test><!-- test count file input without group file output --> 72 <test><!-- test count file input without group file output -->
70 <param name="fasta" value="amazon.unique.fasta"/> 73 <param name="fasta" value="amazon.unique.fasta"/>
71 <param name="intype" value="countfile"/> 74 <param name="intype" value="countfile"/>
72 <param name="names" value="amazon.count_table"/> 75 <param name="names" value="amazon.count_table"/>
73 <output name="out_fasta" md5="177f5cf92a84ab3aef0a665e06178bbe" ftype="fasta"/> 76 <output name="out_fasta" md5="177f5cf92a84ab3aef0a665e06178bbe" ftype="fasta"/>
74 <output name="groups_file" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.groups"/> <!--empty--> 77 <output name="groups_file" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.groups"/> <!--empty-->
78 <param name="savelog" value="true"/>
75 <expand macro="logfile-test"/> 79 <expand macro="logfile-test"/>
76 </test> 80 </test>
77 </tests> 81 </tests>
78 <help><![CDATA[ 82 <help><![CDATA[
79 83