Mercurial > repos > iuc > mothur_create_database

comparison create.database.xml @ 5:5577a44a7b42 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:30:46 -0400
parents 0ec0e6261ee6
children
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4:9b0c452ceb4a 5:5577a44a7b42
50 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Groups for summary file"/> 50 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Groups for summary file"/>
51 <param name="label" type="select" label="label - OTU Labels" optional="true" 51 <param name="label" type="select" label="label - OTU Labels" optional="true"
52 help="Select exactly one label. If none selected, first label in your list or shared file will be used"> 52 help="Select exactly one label. If none selected, first label in your list or shared file will be used">
53 <expand macro="labeloptions"/> 53 <expand macro="labeloptions"/>
54 </param> 54 </param>
55 <expand macro="param-savelog"/>
55 </inputs> 56 </inputs>
56 <outputs> 57 <outputs>
57 <expand macro="logfile-output"/> 58 <expand macro="logfile-output"/>
58 <data name="database" format="tabular" from_work_dir="otu*.database" label="${tool.name} on ${on_string}: database"/> 59 <data name="database" format="tabular" from_work_dir="otu*.database" label="${tool.name} on ${on_string}: database"/>
59 </outputs> 60 </outputs>
64 <param name="repfasta" value="cd-test.repfasta" ftype="fasta"/> 65 <param name="repfasta" value="cd-test.repfasta" ftype="fasta"/>
65 <param name="nameOrCount" value="cd-test.repname" ftype="mothur.names"/> 66 <param name="nameOrCount" value="cd-test.repname" ftype="mothur.names"/>
66 <param name="constaxonomy" value="cd-test.constaxonomy" ftype="mothur.cons.taxonomy"/> 67 <param name="constaxonomy" value="cd-test.constaxonomy" ftype="mothur.cons.taxonomy"/>
67 <param name="label" value="unique"/> 68 <param name="label" value="unique"/>
68 <output name="database" file="cd-test.database" ftype="tabular"/> 69 <output name="database" file="cd-test.database" ftype="tabular"/>
70 <param name="savelog" value="true"/>
69 <expand macro="logfile-test"/> 71 <expand macro="logfile-test"/>
70 </test> 72 </test>
71 <!-- Test with a mothur.count_table file --> 73 <!-- Test with a mothur.count_table file -->
72 <test> 74 <test>
73 <param name="otu" value="cd-test.list" ftype="mothur.list"/> 75 <param name="otu" value="cd-test.list" ftype="mothur.list"/>
74 <param name="repfasta" value="cd-test.repfasta" ftype="fasta"/> 76 <param name="repfasta" value="cd-test.repfasta" ftype="fasta"/>
75 <param name="nameOrCount" value="cd-test.count_table" ftype="mothur.count_table"/> 77 <param name="nameOrCount" value="cd-test.count_table" ftype="mothur.count_table"/>
76 <param name="constaxonomy" value="cd-test.constaxonomy" ftype="mothur.cons.taxonomy"/> 78 <param name="constaxonomy" value="cd-test.constaxonomy" ftype="mothur.cons.taxonomy"/>
77 <param name="label" value="unique"/> 79 <param name="label" value="unique"/>
78 <output name="database" file="cd-test.database" ftype="tabular"/> 80 <output name="database" file="cd-test.database" ftype="tabular"/>
81 <param name="savelog" value="true"/>
79 <expand macro="logfile-test"/> 82 <expand macro="logfile-test"/>
80 </test> 83 </test>
81 </tests> 84 </tests>
82 <help><![CDATA[ 85 <help><![CDATA[
83 86