Mercurial > repos > iuc > mothur_count_seqs

comparison count.seqs.xml @ 4:4649b8f719a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:04:51 -0400
parents 448f43db98c4
children
comparison
equal deleted inserted replaced
3:448f43db98c4 4:4649b8f719a2
44 </options> 44 </options>
45 </param> 45 </param>
46 </when> 46 </when>
47 <when value="no"/> 47 <when value="no"/>
48 </conditional> 48 </conditional>
49 <expand macro="param-savelog"/>
49 </inputs> 50 </inputs>
50 <outputs> 51 <outputs>
51 <expand macro="logfile-output"/> 52 <expand macro="logfile-output"/>
52 <data name="seq_count" format="mothur.count_table" from_work_dir="name*.count_table" label="${tool.name} on ${on_string}: count_table"/> 53 <data name="seq_count" format="mothur.count_table" from_work_dir="name*.count_table" label="${tool.name} on ${on_string}: count_table"/>
53 </outputs> 54 </outputs>
54 <tests> 55 <tests>
55 <test><!-- test default params --> 56 <test><!-- test default params -->
56 <param name="name" value="amazon.names"/> 57 <param name="name" value="amazon.names"/>
57 <output name="seq_count" file="amazon.count_table" ftype="mothur.count_table"/> 58 <output name="seq_count" file="amazon.count_table" ftype="mothur.count_table"/>
59 <param name="savelog" value="true"/>
58 <expand macro="logfile-test"/> 60 <expand macro="logfile-test"/>
59 </test> 61 </test>
60 <test><!-- test with group file --> 62 <test><!-- test with group file -->
61 <param name="name" value="amazon.names"/> 63 <param name="name" value="amazon.names"/>
62 <param name="use" value="yes"/> 64 <param name="use" value="yes"/>
63 <param name="group" value="amazon.groups"/> 65 <param name="group" value="amazon.groups"/>
64 <output name="seq_count" file="amazon_withgroups.count_table" ftype="mothur.count_table"/> 66 <output name="seq_count" file="amazon_withgroups.count_table" ftype="mothur.count_table"/>
67 <param name="savelog" value="true"/>
65 <expand macro="logfile-test"/> 68 <expand macro="logfile-test"/>
66 </test> 69 </test>
67 <test> <!-- test with group file and subset of groups --> 70 <test> <!-- test with group file and subset of groups -->
68 <param name="name" value="amazon.names"/> 71 <param name="name" value="amazon.names"/>
69 <param name="use" value="yes"/> 72 <param name="use" value="yes"/>
70 <param name="group" value="amazon.groups" ftype="mothur.groups"/> 73 <param name="group" value="amazon.groups" ftype="mothur.groups"/>
71 <param name="groups" value="pasture"/> 74 <param name="groups" value="pasture"/>
72 <output name="seq_count" file="amazon_withgroups_pasture.count_table" ftype="mothur.count_table"/> 75 <output name="seq_count" file="amazon_withgroups_pasture.count_table" ftype="mothur.count_table"/>
76 <param name="savelog" value="true"/>
73 <expand macro="logfile-test"/> 77 <expand macro="logfile-test"/>
74 </test> 78 </test>
75 <test> <!-- test with group file and multiple groups --> 79 <test> <!-- test with group file and multiple groups -->
76 <param name="name" value="amazon.names"/> 80 <param name="name" value="amazon.names"/>
77 <param name="use" value="yes"/> 81 <param name="use" value="yes"/>
78 <param name="group" value="amazon.groups" ftype="mothur.groups"/> 82 <param name="group" value="amazon.groups" ftype="mothur.groups"/>
79 <param name="groups" value="pasture,forest"/> 83 <param name="groups" value="pasture,forest"/>
80 <output name="seq_count" md5="b18c03aee561cd24a36b00ad9b22255a" ftype="mothur.count_table"/> 84 <output name="seq_count" md5="b18c03aee561cd24a36b00ad9b22255a" ftype="mothur.count_table"/>
85 <param name="savelog" value="true"/>
81 <expand macro="logfile-test"/> 86 <expand macro="logfile-test"/>
82 </test> 87 </test>
83 </tests> 88 </tests>
84 <help><![CDATA[ 89 <help><![CDATA[
85 90