Mercurial > repos > iuc > mothur_cooccurrence

comparison cooccurrence.xml @ 5:7947bd3c6e8a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:58:05 -0400
parents 1bebb226e793
children 2f33690de2b1
comparison
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4:fe1b1c3c92f0 5:7947bd3c6e8a
54 </options> 54 </options>
55 </param> 55 </param>
56 <param name="label" type="select" optional="true" label="label - Select OTU Labels to include" multiple="true" help="By default all are included if no selection is made."> 56 <param name="label" type="select" optional="true" label="label - Select OTU Labels to include" multiple="true" help="By default all are included if no selection is made.">
57 <expand macro="labeloptions"/> 57 <expand macro="labeloptions"/>
58 </param> 58 </param>
59 <expand macro="param-savelog"/>
59 </inputs> 60 </inputs>
60 <outputs> 61 <outputs>
61 <expand macro="logfile-output"/> 62 <expand macro="logfile-output"/>
62 <data name="out_summary" format="tabular" from_work_dir="otu*.summary" label="${tool.name} on ${on_string}: cooccurence.summary"/> 63 <data name="out_summary" format="tabular" from_work_dir="otu*.summary" label="${tool.name} on ${on_string}: cooccurence.summary"/>
63 </outputs> 64 </outputs>
70 <has_text text="cscore"/> 71 <has_text text="cscore"/>
71 <has_text text="unique"/> 72 <has_text text="unique"/>
72 <has_text text="0.05"/> 73 <has_text text="0.05"/>
73 </assert_contents> 74 </assert_contents>
74 </output> 75 </output>
76 <param name="savelog" value="true"/>
75 <expand macro="logfile-test"/> 77 <expand macro="logfile-test"/>
76 </test> 78 </test>
77 <test><!-- test with label and group select --> 79 <test><!-- test with label and group select -->
78 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> 80 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/>
79 <param name="metric" value="vratio"/> 81 <param name="metric" value="vratio"/>
85 <has_text text="vratio"/> 87 <has_text text="vratio"/>
86 <not_has_text text="unique"/> 88 <not_has_text text="unique"/>
87 <has_text text="0.05"/> 89 <has_text text="0.05"/>
88 </assert_contents> 90 </assert_contents>
89 </output> 91 </output>
92 <param name="savelog" value="true"/>
90 <expand macro="logfile-test"/> 93 <expand macro="logfile-test"/>
91 </test> 94 </test>
92 </tests> 95 </tests>
93 <help><![CDATA[ 96 <help><![CDATA[
94 97