Mercurial > repos > iuc > mothur_consensus_seqs

diff consensus.seqs.xml @ 5:e26da66f2ad8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:38:14 -0400
parents 05195067dd2e
children
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--- a/consensus.seqs.xml	Wed Feb 14 12:02:37 2018 -0500
+++ b/consensus.seqs.xml	Tue Mar 20 13:38:14 2018 -0400
@@ -58,6 +58,7 @@
         <param name="cutoff" type="integer" value="" optional="True" min="1" max="100" label="Cutoff - set a percentage of sequences that support the base"
             help="For example: cutoff=95 would return the base that was supported by at least 95% of sequences. Must be between 1 and 100. Optional"/>
         <param name="count" type="data" format="mothur.count_table" optional="true" label="Count - a count table" help="this file can be generated by count.seqs"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -85,6 +86,7 @@
             <param name="fasta" value="amazon.align_head" ftype="mothur.align"/>
             <output name="summary" md5="61a0e170a8b881135421afd0cea8305a" ftype="tabular"/>
             <output name="cons_fasta" md5="82f3475b61f240eba09597a409364c04" ftype="mothur.align"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with list file -->
@@ -102,6 +104,7 @@
             <output_collection name="consensussummaries" count="3">
                 <element name="0.30" md5="d595234c6018dfcc1465e59d35d59205" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>